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JCC
2011
109views more  JCC 2011»
12 years 7 months ago
VoteDock: Consensus docking method for prediction of protein-ligand interactions
: Molecular recognition plays a fundamental role in all biological processes, and that is why great efforts have been made to understand and predict protein–ligand interactions. ...
Dariusz Plewczynski, Michal Lazniewski, Marcin von...
JCC
2011
154views more  JCC 2011»
12 years 7 months ago
Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database
: Docking is one of the most commonly used techniques in drug design. It is used for both identifying correct poses of a ligand in the binding site of a protein as well as for the ...
Dariusz Plewczynski, Michal Lazniewski, Rafal Augu...
JCC
2002
85views more  JCC 2002»
13 years 4 months ago
Efficiency of the multicanonical simulation method as applied to peptides of increasing size: The heptapeptide deltorphin
: The advantage of the multicanonical (MUCA) simulation method of Berg and coworkers over the conventional Metropolis method is in its ability to move a system effectively across e...
Fatih Yaar, Handan Arkin, Tarik Çelik, Bern...
JCC
2002
74views more  JCC 2002»
13 years 4 months ago
Improved RGF method to find saddle points
: The predictor-corrector method for following a reduced gradient (RGF) to determine saddle points [Quapp, W. et al., J Comput Chem 1998, 19, 1087] is further accelerated by a modi...
Michael Hirsch, Wolfgang Quapp