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CPM
2004
Springer
144views Combinatorics» more  CPM 2004»
13 years 10 months ago
A Simple Optimal Representation for Balanced Parentheses
We consider succinct, or highly space-efficient, representations of a (static) string consisting of n pairs of balanced parentheses, that support natural operations such as findi...
Richard F. Geary, Naila Rahman, Rajeev Raman, Venk...
CPM
2004
Springer
93views Combinatorics» more  CPM 2004»
13 years 10 months ago
Improved Single and Multiple Approximate String Matching
Kimmo Fredriksson, Gonzalo Navarro
CPM
2004
Springer
97views Combinatorics» more  CPM 2004»
13 years 10 months ago
New Results for the 2-Interval Pattern Problem
Guillaume Blin, Guillaume Fertin, Stéphane ...
CPM
2004
Springer
120views Combinatorics» more  CPM 2004»
13 years 10 months ago
Polynomial-Time Algorithms for the Ordered Maximum Agreement Subtree Problem
For a set of rooted, unordered, distinctly leaf-labeled trees, the NP-hard maximum agreement subtree problem (MAST) asks for a tree contained (up to isomorphism or homeomorphism) i...
Anders Dessmark, Jesper Jansson, Andrzej Lingas, E...
CPM
2004
Springer
156views Combinatorics» more  CPM 2004»
13 years 10 months ago
A Computational Model for RNA Multiple Structural Alignment.
Abstract. This paper addresses the problem of aligning multiple sequences of non-coding RNA genes. We approach this problem with the biologically motivated paradigm that scoring of...
Eugene Davydov, Serafim Batzoglou
CPM
2004
Springer
168views Combinatorics» more  CPM 2004»
13 years 10 months ago
The Protein Sequence Design Problem in Canonical Model on 2D and 3D Lattices
In this paper we investigate the protein sequence design (PSD) problem (also known as the inverse protein folding problem) under the Canonical model 4 on 2D and 3D lattices [12, 25...
Piotr Berman, Bhaskar DasGupta, Dhruv Mubayi, Robe...
CPM
2004
Springer
87views Combinatorics» more  CPM 2004»
13 years 10 months ago
A Trie-Based Approach for Compacting Automata
We describe a new technique for reducing the number of nodes and symbols in automata based on tries. The technique stems from some results on anti-dictionaries for data compression...
Maxime Crochemore, Chiara Epifanio, Roberto Grossi...
CPM
2004
Springer
145views Combinatorics» more  CPM 2004»
13 years 10 months ago
Computational Problems in Perfect Phylogeny Haplotyping: Xor-Genotypes and Tag SNPs
The perfect phylogeny model for haplotype evolution has been successfully applied to haplotype resolution from genotype data. In this study we explore the application of the perfe...
Tamar Barzuza, Jacques S. Beckmann, Ron Shamir, It...
CPM
2004
Springer
102views Combinatorics» more  CPM 2004»
13 years 10 months ago
Computational Design of New and Recombinant Selenoproteins
Rolf Backofen, Anke Busch