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CPM
2006
Springer
176views Combinatorics» more  CPM 2006»
13 years 8 months ago
Longest Common Subsequences in Permutations and Maximum Cliques in Circle Graphs
For two strings a, b, the longest common subsequence (LCS) problem consists in comparing a and b by computing the length of their LCS. In a previous paper, we defined a generalisat...
Alexandre Tiskin
CPM
2006
Springer
125views Combinatorics» more  CPM 2006»
13 years 8 months ago
Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures
Abstract. Protein structure analysis is one of the most important research issues in the post-genomic era, and faster and more accurate query data structures for such 3-D structure...
Tetsuo Shibuya
CPM
2006
Springer
106views Combinatorics» more  CPM 2006»
13 years 8 months ago
Sublinear Algorithms for Parameterized Matching
Leena Salmela, Jorma Tarhio
CPM
2006
Springer
164views Combinatorics» more  CPM 2006»
13 years 8 months ago
Dynamic Entropy-Compressed Sequences and Full-Text Indexes
Veli Mäkinen, Gonzalo Navarro
CPM
2006
Springer
114views Combinatorics» more  CPM 2006»
13 years 8 months ago
A Simpler Analysis of Burrows-Wheeler Based Compression
Haim Kaplan, Shir Landau, Elad Verbin
CPM
2006
Springer
143views Combinatorics» more  CPM 2006»
13 years 8 months ago
Algorithms for Finding a Most Similar Subforest
Given an ordered labeled forest F ("the target forest") and an ordered labeled forest G ("the pattern forest"), the most similar subforest problem is to find a ...
Jesper Jansson, Zeshan Peng
CPM
2006
Springer
140views Combinatorics» more  CPM 2006»
13 years 8 months ago
Identifying Co-referential Names Across Large Corpora
A single logical entity can be referred to by several different names over a large text corpus. We present our algorithm for finding all suchco-reference sets in a large corpus. Ou...
Levon Lloyd, Andrew Mehler, Steven Skiena
CPM
2006
Springer
137views Combinatorics» more  CPM 2006»
13 years 8 months ago
Large Scale Matching for Position Weight Matrices
Aude Liefooghe, Hélène Touzet, Jean-...
CPM
2006
Springer
175views Combinatorics» more  CPM 2006»
13 years 8 months ago
On-Line Linear-Time Construction of Word Suffix Trees
Abstract. Suffix trees are the key data structure for text string matching, and are used in wide application areas such as bioinformatics and data compression. Sparse suffix trees ...
Shunsuke Inenaga, Masayuki Takeda
CPM
2006
Springer
145views Combinatorics» more  CPM 2006»
13 years 8 months ago
Approximation of RNA Multiple Structural Alignment
Abstract. In the context of non-coding RNA (ncRNA) multiple structural alignment, Davydov and Batzoglou introduced in [7] the problem of finding the largest nested linear graph tha...
Marcin Kubica, Romeo Rizzi, Stéphane Vialet...