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CSB
2003
IEEE
12 years 5 months ago
A New Similarity Measure among Protein Sequences
Protein sequence analysis is an important tool to decode the logic of life. One of the most important similarity measures in this area is the edit distance between amino acids of ...
Kuen-Pin Wu, Hsin-Nan Lin, Ting-Yi Sung, Wen-Lian ...
CSB
2003
IEEE
12 years 5 months ago
A rule-based framework for gene regulation pathways discovery
Bartosz Wilczynski, Torgeir R. Hvidsten, Andriy Kr...
CSB
2003
IEEE
128views Bioinformatics» more  CSB 2003»
12 years 5 months ago
Degenerate Primer Design via Clustering
This paper describes a new strategy for designing degenerate primers for a given multiple alignment of amino acid sequences. Degenerate primers are useful for amplifying homologou...
Xintao Wei, David N. Kuhn, Giri Narasimhan
CSB
2003
IEEE
12 years 5 months ago
An Exact Algorithm For Determining Protein Backbone Structure From NH Residual Dipolar Couplings
We have developed a novel algorithm for protein backbone structure determination using global orientational restraints on internuclear bond vectors derived from residual dipolar c...
Lincong Wang, Ramgopal R. Mettu, Ryan H. Lilien, B...
CSB
2003
IEEE
125views Bioinformatics» more  CSB 2003»
12 years 5 months ago
A Statistical Model of Proteolytic Digestion
I-Jeng Wang, Christopher P. Diehl, Fernando J. Pin...
CSB
2003
IEEE
118views Bioinformatics» more  CSB 2003»
12 years 5 months ago
Automated Protein NMR Resonance Assignments
NMR resonance peak assignment is one of the key steps in solving an NMR protein structure. The assignment process links resonance peaks to individual residues of the target protei...
Xiang Wan, Dong Xu, Carolyn M. Slupsky, Guohui Lin
CSB
2003
IEEE
123views Bioinformatics» more  CSB 2003»
12 years 5 months ago
Fourier Harmonic Approach for Visualizing Temporal Patterns of Gene Expression Data
DNA microarray technology provides a broad snapshot of the state of the cell by measuring the expression levels of thousands of genes simultaneously. Visualization techniques can ...
Li Zhang, Aidong Zhang, Murali Ramanathan
CSB
2003
IEEE
124views Bioinformatics» more  CSB 2003»
12 years 5 months ago
SMASHing regulatory sites in DNA by human
Regulatory sequence elements provide important clues to understanding and predicting gene expression. Although the binding sites for hundreds of transcription factors are known, t...
Mihaela Zavolan, Nicholas D. Socci, Nikolaus Rajew...
CSB
2003
IEEE
12 years 5 months ago
An SVM-based Algorithm for Identification of Photosynthesis-specific Genome Features
This paper presents a novel algorithm for identification and functional characterization of “key” genome features responsible for a particular biochemical process of interest....
Gong-Xin Yu, George Ostrouchov, Al Geist, Nagiza F...
CSB
2003
IEEE
12 years 5 months ago
A New Approach for Gene Annotation Using Unambiguous Sequence Joining
The problem addressed by this paper is accurate and automatic gene annotation following precise identification/annotation of exon and intron boundaries of biologically verified ...
Alexandre Tchourbanov, Daniel Quest, Hesham H. Ali...
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