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CSB
2004
IEEE
108views Bioinformatics» more  CSB 2004»
13 years 8 months ago
Embedded Computation of Maximum-Likelihood Phylogeny Inference Using Platform FPGA
Our previous work to accelerate phylogeny inference using HW/SW(Hardware/Software) co-design has recently been extended to a more powerful embedded computing platform. In this pla...
Terrence S. T. Mak, Kai-Pui Lam
CSB
2004
IEEE
103views Bioinformatics» more  CSB 2004»
13 years 8 months ago
Identifying MicroRNAs in Plant Genomes
The ability to control gene expression during development in plants could be used for improving crop yields, resistance to disease, and environmental adaptability. It has been sug...
Christopher Maher, Marja Timmermans, Lincoln Stein...
CSB
2004
IEEE
151views Bioinformatics» more  CSB 2004»
13 years 8 months ago
Gridding and Compression of Microarray Images
With the recent explosion of interest in microarray technology, massive amounts of microarray images are currently being produced. The storage and the transmission of this type of...
Stefano Lonardi, Yu Luo
CSB
2004
IEEE
154views Bioinformatics» more  CSB 2004»
13 years 8 months ago
Multi-Knockout Genetic Network Analysis: The Rad6 Example
A novel and rigorous Multi-perturbation Shapley Value Analysis (MSA) method has been recently presented [12]. The method addresses the challenge of defining and calculating the fu...
Alon Kaufman, Martin Kupiec, Eytan Ruppin
CSB
2004
IEEE
164views Bioinformatics» more  CSB 2004»
13 years 8 months ago
Biclustering in Gene Expression Data by Tendency
The advent of DNA microarray technologies has revolutionized the experimental study of gene expression. Clustering is the most popular approach of analyzing gene expression data a...
Jinze Liu, Jiong Yang, Wei Wang 0010
CSB
2004
IEEE
173views Bioinformatics» more  CSB 2004»
13 years 8 months ago
Gene Ontology Friendly Biclustering of Expression Profiles
The soundness of clustering in the analysis of gene expression profiles and gene function prediction is based on the hypothesis that genes with similar expression profiles may imp...
Jinze Liu, Wei Wang 0010, Jiong Yang
CSB
2004
IEEE
135views Bioinformatics» more  CSB 2004»
13 years 8 months ago
Selection of Patient Samples and Genes for Outcome Prediction
Gene expression profiles with clinical outcome data enable monitoring of disease progression and prediction of patient survival at the molecular level. We present a new computatio...
Huiqing Liu, Jinyan Li, Limsoon Wong
CSB
2004
IEEE
136views Bioinformatics» more  CSB 2004»
13 years 8 months ago
Minimum Entropy Clustering and Applications to Gene Expression Analysis
Clustering is a common methodology for analyzing the gene expression data. In this paper, we present a new clustering algorithm from an information-theoretic point of view. First,...
Haifeng Li, Keshu Zhang, Tao Jiang