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CSB
2004
IEEE
146views Bioinformatics» more  CSB 2004»
13 years 8 months ago
Automated Protein Classification Using Consensus Decision
We propose a novel technique for automatically generating the SCOP classification of a protein structure with high accuracy. High accuracy is achieved by combining the decisions o...
Tolga Can, Orhan Çamoglu, Ambuj K. Singh, Y...
CSB
2004
IEEE
141views Bioinformatics» more  CSB 2004»
13 years 8 months ago
MinPD: Distance-Based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV Quasispecies
A new computational method to study within-host viral evolution is explored to better understand the evolution and pathogenesis of viruses. Traditional phylogenetic tree methods a...
Patricia Buendia, Giri Narasimhan
CSB
2004
IEEE
125views Bioinformatics» more  CSB 2004»
13 years 8 months ago
Gene Length and Alternative Transcription in Fruit Fly
Alternative transcription, in which a single gene may give rise to multiple variant mRNA forms, is widely recognized as an important source of protein diversity in complex, eukary...
Boris Budagyan, Ann E. Loraine
CSB
2004
IEEE
115views Bioinformatics» more  CSB 2004»
13 years 8 months ago
PoPS: A Computational Tool for Modeling and Predicting Protease Specificity
Proteases play a fundamental role in the control of intra- and extracellular processes by binding and cleaving specific amino acid sequences. Identifying these targets is extremel...
Sarah E. Boyd, Maria J. García de la Banda,...
CSB
2004
IEEE
113views Bioinformatics» more  CSB 2004»
13 years 8 months ago
Shannon Information in Complete Genomes
Shannon information in the genomes of all completely sequenced prokaryotes and eukaryotes are measured in word lengths of two to ten letters. It is found that in a scale-dependent...
Chang-Heng Chang, Li-Ching Hsieh, Ta-Yuan Chen, Ho...
CSB
2004
IEEE
142views Bioinformatics» more  CSB 2004»
13 years 8 months ago
FastR: Fast Database Search Tool for Non-Coding RNA
The discovery of novel non-coding RNAs has been among the most exciting recent developments in Biology. Yet, many more remain undiscovered. It has been hypothesized that there is ...
Vineet Bafna, Shaojie Zhang