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BMCBI
2006
116views more  BMCBI 2006»
13 years 4 months ago
JColorGrid: software for the visualization of biological measurements
Background: Two-dimensional data colourings are an effective medium by which to represent three-dimensional data in two dimensions. Such "color-grid" representations hav...
Marcin P. Joachimiak, Jennifer L. Weissman, Barnab...
FGCS
2008
134views more  FGCS 2008»
13 years 4 months ago
Large scale agent-based simulation on the grid
The development of many complex simulation applications requires collaborative effort from researchers with different domain knowledge and expertise, possibly at different locatio...
Dan Chen, Georgios K. Theodoropoulos, Stephen John...
CORR
2010
Springer
73views Education» more  CORR 2010»
13 years 4 months ago
Exponential Family Hybrid Semi-Supervised Learning
We present an approach to semi-supervised learning based on an exponential family characterization. Our approach generalizes previous work on coupled priors for hybrid generative/...
Arvind Agarwal, Hal Daumé III
CGF
2010
143views more  CGF 2010»
13 years 4 months ago
Coherent Culling and Shading for Large Molecular Dynamics Visualization
Molecular dynamics simulations are a principal tool for studying molecular systems. Such simulations are used to investigate molecular structure, dynamics, and thermodynamical pro...
Sebastian Grottel, Guido Reina, Carsten Dachsbache...
BMCBI
2008
171views more  BMCBI 2008»
13 years 4 months ago
A general approach to simultaneous model fitting and variable elimination in response models for biological data with many more
Background: With the advent of high throughput biotechnology data acquisition platforms such as micro arrays, SNP chips and mass spectrometers, data sets with many more variables ...
Harri T. Kiiveri
BMCBI
2008
134views more  BMCBI 2008»
13 years 4 months ago
Clustering cancer gene expression data: a comparative study
Background The use of clustering methods for the discovery of cancer subtypes has drawn a great deal of attention in the scientific community. While bioinformaticians have propose...
Marcílio Carlos Pereira de Souto, Ivan G. C...
BMCBI
2008
148views more  BMCBI 2008»
13 years 4 months ago
Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements
Background: Liquid chromatography coupled to mass spectrometry (LC-MS) has become a prominent tool for the analysis of complex proteomics and metabolomics samples. In many applica...
Eva Lange, Ralf Tautenhahn, Steffen Neumann, Cleme...
BMCBI
2008
109views more  BMCBI 2008»
13 years 4 months ago
Merging microsatellite data: enhanced methodology and software to combine genotype data for linkage and association analysis
Background: Correctly merged data sets that have been independently genotyped can increase statistical power in linkage and association studies. However, alleles from microsatelli...
Angela P. Presson, Eric M. Sobel, Paivi Pajukanta,...
BMCBI
2008
94views more  BMCBI 2008»
13 years 4 months ago
A comprehensive re-analysis of the Golden Spike data: Towards a benchmark for differential expression methods
Background: The Golden Spike data set has been used to validate a number of methods for summarizing Affymetrix data sets, sometimes with seemingly contradictory results. Much less...
Richard D. Pearson
BMCBI
2008
218views more  BMCBI 2008»
13 years 4 months ago
LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method
Background: Testing for selection is becoming one of the most important steps in the analysis of multilocus population genetics data sets. Existing applications are difficult to u...
Tiago Antao, Ana Lopes, Ricardo J. Lopes, Albano B...