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DILS
2006
Springer
11 years 3 months ago
Link Discovery in Graphs Derived from Biological Databases
Public biological databases contain vast amounts of rich data that can also be used to create and evaluate new biological hypothesis. We propose a method for link discovery in biol...
Petteri Sevon, Lauri Eronen, Petteri Hintsanen, Ki...
DILS
2006
Springer
11 years 3 months ago
Collection-Oriented Scientific Workflows for Integrating and Analyzing Biological Data
Steps in scientific workflows often generate collections of results, causing the data flowing through workflows to become increasingly nested. Because conventional workflow compone...
Timothy M. McPhillips, Shawn Bowers, Bertram Lud&a...
DILS
2006
Springer
11 years 3 months ago
Data Access and Integration in the ISPIDER Proteomics Grid
Abstract. Grid computing has great potential for supporting the integration of complex, fast changing biological data repositories to enable distributed data analysis. One scenario...
Lucas Zamboulis, Hao Fan, Khalid Belhajjame, Jenni...
DILS
2006
Springer
11 years 3 months ago
Improving Text Mining with Controlled Natural Language: A Case Study for Protein Interactions
Linking the biomedical literature to other data resources is notoriously difficult and requires text mining. Text mining aims to automatically extract facts from literature. Since ...
Tobias Kuhn, Loïc Royer, Norbert E. Fuchs, Mi...
DILS
2006
Springer
11 years 3 months ago
A Method for Similarity-Based Grouping of Biological Data
Similarity-based grouping of data entries in one or more data sources is a task underlying many different data management tasks, such as, structuring search results, removal of red...
Vaida Jakoniene, David Rundqvist, Patrick Lambrix
DILS
2006
Springer
11 years 3 months ago
On Querying OBO Ontologies Using a DAG Pattern Query Language
The Open Biomedical Ontologies (OBO) is a consortium that serves as a repository of ontologies that are structured like directed acyclic graphs. In this paper we present a language...
Amarnath Gupta, Simone Santini
DILS
2006
Springer
11 years 3 months ago
An Extensible Light-Weight XML-Based Monitoring System for Sequence Databases
Life science researchers want biological information in their interest to become available to them as soon as possible. A monitoring system is a solution that relieves biologists f...
Dieter Van de Craen, Frank Neven, Kerstin Koch
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