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DNA
2007
Springer
106views Bioinformatics» more  DNA 2007»
9 years 4 months ago
Hardware Acceleration for Thermodynamic Constrained DNA Code Generation
Reliable DNA computing requires a large pool of oligonucleotides that do not produce cross-hybridize. In this paper, we present a transformed algorithm to calculate the maximum wei...
Qinru Qiu, Prakash Mukre, Morgan Bishop, Daniel J....
DNA
2007
Springer
127views Bioinformatics» more  DNA 2007»
9 years 6 months ago
Discrete Simulations of Biochemical Dynamics
Abstract. Metabolic P systems, shortly MP systems, are a special class of P systems, introduced for expressing biological metabolism. Their dynamics are computed by metabolic algor...
Vincenzo Manca
DNA
2007
Springer
9 years 6 months ago
Staged Self-assembly: Nanomanufacture of Arbitrary Shapes with O (1) Glues
We introduce staged self-assembly of Wang tiles, where tiles can be added dynamically in sequence and where intermediate constructions can be stored for later mixing. This model a...
Erik D. Demaine, Martin L. Demaine, Sándor ...
DNA
2007
Springer
107views Bioinformatics» more  DNA 2007»
9 years 6 months ago
Autonomous Programmable Nanorobotic Devices Using DNAzymes
Abstract. A major challenge in nanoscience is the design of synthetic molecular devices that run autonomously and are programmable. DNA-based synthetic molecular devices have the a...
John H. Reif, Sudheer Sahu
DNA
2007
Springer
159views Bioinformatics» more  DNA 2007»
9 years 6 months ago
Activatable Tiles: Compact, Robust Programmable Assembly and Other Applications
While algorithmic DNA self-assembly is, in theory, capable of forming complex patterns, its experimental demonstration has been limited by significant assembly errors. In this pa...
Urmi Majumder, Thomas H. LaBean, John H. Reif
DNA
2007
Springer
123views Bioinformatics» more  DNA 2007»
9 years 6 months ago
Equivalence in Template-Guided Recombination
We consider theoretical properties of the template-guided recombination operation. In particular, we consider the decidability of whether two sets of templates are equivalent, that...
Michael Domaratzki
DNA
2007
Springer
176views Bioinformatics» more  DNA 2007»
9 years 6 months ago
Asynchronous Spiking Neural P Systems: Decidability and Undecidability
In search for “realistic” bio-inspired computing models, we consider asynchronous spiking neural P systems, in the hope to get a class of computing devices with decidable prope...
Matteo Cavaliere, Ömer Egecioglu, Oscar H. Ib...
DNA
2007
Springer
107views Bioinformatics» more  DNA 2007»
9 years 6 months ago
Solutions to Computational Problems Through Gene Assembly
Abstract. Gene assembly in ciliates is an impressive computational process. Ciliates have a unique way of storing their genetic information in two fundamentally different forms wi...
Artiom Alhazov, Ion Petre, Vladimir Rogojin
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