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CMIG
2010
110views more  CMIG 2010»
8 years 8 months ago
Unsupervised SVM-based gridding for DNA microarray images
This paper presents a novel method for unsupervised DNA microarray gridding based on Support Vector Machines (SVMs). Each spot is a small region on the microarray surface where cha...
Dimitris G. Bariamis, Dimitris Maroulis, Dimitrios...
JCB
2002
93views more  JCB 2002»
9 years 28 days ago
Unfolding of Microarray Data
The use of DNA microarrays for the analysis of complex biological samples is becoming a mainstream part of biomedical research. One of the most commonly used methods compares the ...
Andrew B. Goryachev, Pascale F. Macgregor, Aled M....
JCB
2000
103views more  JCB 2000»
9 years 1 months ago
Testing for Differentially-Expressed Genes by Maximum-Likelihood Analysis of Microarray Data
Although two-color uorescent DNA microarrays are now standard equipment in many molecular biology laboratories, methods for identifying differentially expressed genes in microarra...
Trey Ideker, Vesteinn Thorsson, Andrew F. Siegel, ...
BMCBI
2004
116views more  BMCBI 2004»
9 years 1 months ago
Array-A-Lizer: A serial DNA microarray quality analyzer
Background: The proliferate nature of DNA microarray results have made it necessary to implement a uniform and quick quality control of experimental results to ensure the consiste...
Andreas Petri, Jan Fleckner, Mads Wichmann Matthie...
BMCBI
2004
126views more  BMCBI 2004»
9 years 1 months ago
Visualization and analysis of microarray and gene ontology data with treemaps
Background: The increasing complexity of genomic data presents several challenges for biologists. Limited computer monitor views of data complexity and the dynamic nature of data ...
Eric H. Baehrecke, Niem Dang, Ketan Babaria, Ben S...
BMCBI
2005
126views more  BMCBI 2005»
9 years 1 months ago
An algorithm for automatic evaluation of the spot quality in two-color DNA microarray experiments
Background: Although DNA microarray technologies are very powerful for the simultaneous quantitative characterization of thousands of genes, the quality of the obtained experiment...
Eugene Novikov, Emmanuel Barillot
BMCBI
2005
137views more  BMCBI 2005»
9 years 1 months ago
ArrayQuest: a web resource for the analysis of DNA microarray data
Background: Numerous microarray analysis programs have been created through the efforts of Open Source software development projects. Providing browser-based interfaces that allow...
Gary L. Argraves, Saurin D. Jani, Jeremy L. Barth,...
BMCBI
2006
114views more  BMCBI 2006»
9 years 1 months ago
A methodology for global validation of microarray experiments
Background: DNA microarrays are popular tools for measuring gene expression of biological samples. This ever increasing popularity is ensuring that a large number of microarray st...
Mathieu Miron, Owen Z. Woody, Alexandre Marcil, Ca...
BMCBI
2006
127views more  BMCBI 2006»
9 years 1 months ago
Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions
Background: DNA microarrays, which have been increasingly used to monitor mRNA transcripts at a global level, can provide detailed insight into cellular processes involved in resp...
Tao Han, Cathy D. Melvin, Leming M. Shi, William S...
BMCBI
2008
142views more  BMCBI 2008»
9 years 1 months ago
Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures
Background: DNA microarray technology allows for the measurement of genome-wide expression patterns. Within the resultant mass of data lies the problem of analyzing and presenting...
Meng Piao Tan, Erin N. Smith, James R. Broach, Chr...
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