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NAR
2011
215views Computer Vision» more  NAR 2011»
12 years 7 months ago
dbCRID: a database of chromosomal rearrangements in human diseases
Chromosomal rearrangement (CR) events result from abnormal breaking and rejoining of the DNA molecules, or from crossing-over between repetitive DNA sequences, and they are involv...
Fanlou Kong, Jing Zhu, Jun Wu, Jianjian Peng, Ying...
JCB
2007
94views more  JCB 2007»
13 years 4 months ago
A Quantile Method for Sizing Optical Maps
Optical mapping is an integrated system for the analysis of single DNA molecules. It constructs restriction maps (noted as “optical map”) from individual DNA molecules present...
Haifeng Li, Anton Valouev, David C. Schwartz, Mich...
NC
2006
149views Neural Networks» more  NC 2006»
13 years 4 months ago
The Construction of Minimal DNA Expressions
Abstract. We describe a formal language/notation for DNA molecules that may contain nicks and gaps. The elements of the language, DNA expressions, denote formal DNA molecules. Diff...
Rudy van Vliet, Hendrik Jan Hoogeboom, Grzegorz Ro...
IAJIT
2006
109views more  IAJIT 2006»
13 years 4 months ago
Unconstraint Assignment Problem: A Molecular Computing Approach
: Deoxyribonucleic Acid or DNA-based computing is an emerging field that bridging the gap between chemistry, molecular biology, computer science, and mathematics. This research are...
Zuwairie Ibrahim, Yusei Tsuboi, Osamu Ono, Marzuki...
FCS
2006
13 years 6 months ago
A Procedure for Max-SAT with DNA Strands
Abstract: In recent works for high performance computing, computation with DNA molecules, that is, DNA computing, has had considerable attention as one of non-silicon based computi...
Yuichiro Tokumaru, Akihiro Fujiwara
DNA
2003
Springer
13 years 9 months ago
One Dimensional Boundaries for DNA Tile Self-Assembly
In this paper we report the design and synthesis of DNA molecules (referred to as DNA tiles) with specific binding interactions that guide self-assembly to make one-dimensional as...
Rebecca Schulman, Shaun Lee, Nick Papadakis, Erik ...
GG
2004
Springer
13 years 10 months ago
Tutorial on DNA Computing and Graph Transformation
that graph transformations provide the right level of abstraction, and useful technical tools for studying gene assembly. On the other hand, the gene assembly process inspires a ne...
Tero Harju, Ion Petre, Grzegorz Rozenberg
BIRTHDAY
2004
Springer
13 years 10 months ago
Two Models for Gene Assembly in Ciliates
Two models for gene assembly in ciliates have been proposed and investigated in the last few years. The DNA manipulations postulated in the two models are very different: one mode...
Tero Harju, Ion Petre, Grzegorz Rozenberg