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DASFAA
2003
IEEE
151views Database» more  DASFAA 2003»
13 years 9 months ago
Approximate String Matching in DNA Sequences
Approximate string matching on large DNA sequences data is very important in bioinformatics. Some studies have shown that suffix tree is an efficient data structure for approxim...
Lok-Lam Cheng, David Wai-Lok Cheung, Siu-Ming Yiu
IDEAL
2004
Springer
13 years 9 months ago
PromSearch: A Hybrid Approach to Human Core-Promoter Prediction
This paper presents an effective core-promoter prediction system on human DNA sequence. The system, named PromSearch, employs a hybrid approach which combines search-by-content met...
Byoung-Hee Kim, Seong-Bae Park, Byoung-Tak Zhang
DASFAA
2005
IEEE
136views Database» more  DASFAA 2005»
13 years 10 months ago
Indexing DNA Sequences Using q-Grams
We have observed in recent years a growing interest in similarity search on large collections of biological sequences. Contributing to the interest, this paper presents a method fo...
Xia Cao, Shuai Cheng Li, Anthony K. H. Tung
CPM
2007
Springer
222views Combinatorics» more  CPM 2007»
13 years 10 months ago
Computing Exact p-Value for Structured Motif
Extracting motifs from a set of DNA sequences is important in computational biology. Occurrence probability is a common used statistics to evaluate the statistical significance of...
Jing Zhang, Xi Chen, Ming Li
FUZZIEEE
2007
IEEE
13 years 10 months ago
Mining and Predicting CpG islands
— A DNA sequence can be described as a string composed of four symbols: A, T, C and G. Each symbol represents a chemically distinct nucleotide molecule. Combinations of two nucle...
Christopher Previti, Oscar Harari, Coral del Val
ACRI
2008
Springer
13 years 10 months ago
Automatic Design of FPGA Processor for the Backtracking of DNA Sequences Evolution Using Cellular Automata and Genetic Algorithm
In several cases, the DNA sequences of an organism are available in different stages of its evolution and it is desirable to reconstruct the DNA sequence in a previous evolution st...
Georgios Ch. Sirakoulis
ICCS
2009
Springer
13 years 11 months ago
A Massively Parallel Architecture for Bioinformatics
Abstract. Today’s general purpose computers lack in meeting the requirements on computing performance for standard applications in bioinformatics like DNA sequence alignment, err...
Gerd Pfeiffer, Stefan Baumgart, Jan Schröder,...