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CORR
2006
Springer
125views Education» more  CORR 2006»
8 years 3 months ago
Barriers and local minima in energy landscapes of stochastic local search
: A local search algorithm operating on an instance of a Boolean constraint satisfaction problem (in particular, k-SAT) can be viewed as a stochastic process traversing successive ...
Petteri Kaski
CORR
2008
Springer
103views Education» more  CORR 2008»
8 years 3 months ago
Flatness of the Energy Landscape for Horn Clauses
Abstract The Little-Hopfield neural network programmed with Horn clauses is studied. We argue that the energy landscape of the system, corresponding to the inconsistency function f...
Saratha Sathasivam, Wan Ahmad Tajuddin Wan Abdulla...
ICML
2010
IEEE
8 years 4 months ago
Learning Deep Boltzmann Machines using Adaptive MCMC
When modeling high-dimensional richly structured data, it is often the case that the distribution defined by the Deep Boltzmann Machine (DBM) has a rough energy landscape with man...
Ruslan Salakhutdinov
NIPS
2007
8 years 4 months ago
Feature Selection Methods for Improving Protein Structure Prediction with Rosetta
Rosetta is one of the leading algorithms for protein structure prediction today. It is a Monte Carlo energy minimization method requiring many random restarts to find structures ...
Ben Blum, Michael I. Jordan, David Kim, Rhiju Das,...
DNA
2004
Springer
102views Bioinformatics» more  DNA 2004»
8 years 7 months ago
Minimum Basin Algorithm: An Effective Analysis Technique for DNA Energy Landscapes
To design DNA nano-machines or analyze DNA molecular reactions, it is important to be able to predict the energy landscape of molecular structures and the energy barrier of a trans...
Mitsuhiro Kubota, Masami Hagiya
GCB
2009
Springer
180views Biometrics» more  GCB 2009»
8 years 10 months ago
2D Projections of RNA Folding Landscapes
Abstract: The analysis of RNA folding landscapes yields insights into the kinetic folding behavior not available from classical structure prediction methods. This is especially imp...
Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker
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