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GCB
2004
Springer
223views Biometrics» more  GCB 2004»
9 years 3 months ago
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
Michael Beckstette, Dirk Strothmann, Robert Homann...
GCB
2004
Springer
139views Biometrics» more  GCB 2004»
9 years 5 months ago
Graph Alignments: A New Concept to Detect Conserved Regions in Protein Active Sites
: We introduce the novel concept of graph alignment, a generalization of graph isomorphism that is motivated by the commonly used multiple sequence alignments. Graph alignments and...
Nils Weskamp, Eyke Hüllermeier, Daniel Kuhn, ...
GCB
2004
Springer
139views Biometrics» more  GCB 2004»
9 years 5 months ago
Conserved RNA Pseudoknots
: Pseudoknots are essential for the functioning of many small RNA molecules. In addition, viral RNAs often exhibit pseudoknots that are required at various stages of the viral life...
C. Thurner, Ivo L. Hofacker, Peter F. Stadler
GCB
2004
Springer
91views Biometrics» more  GCB 2004»
9 years 5 months ago
A Method for Fast Approximate Searching of Polypeptide Structures in the PDB
: The main contribution of this paper is a novel approach for fast searching in huge structural databases like the PDB. The data structure is based on an adaption of the generalize...
Hanjo Täubig, Arno Buchner, Jan Griebsch
GCB
2004
Springer
126views Biometrics» more  GCB 2004»
9 years 5 months ago
Proteochemometrics Modeling of Receptor-Ligand Interactions Using Rough Sets
Abstract: We report on a model for the interaction of chimeric melanocortin Gprotein coupled receptors with peptide ligands using the rough set approach. Rough sets generate If-The...
H. Strömbergsson, Peteris Prusis, Herman Mide...
GCB
2004
Springer
77views Biometrics» more  GCB 2004»
9 years 5 months ago
SequenceJuxtaposer: Fluid Navigation For Large-Scale Sequence Comparison in Context
James Slack, Kristian Hildebrand, Tamara Munzner, ...
GCB
2004
Springer
113views Biometrics» more  GCB 2004»
9 years 5 months ago
Feature Based Representation and Detection of Transcription Factor Binding Sites
: The prediction of transcription factor binding sites is an important problem, since it reveals information about the transcriptional regulation of genes. A commonly used represen...
Rainer Pudimat, Ernst Günter Schukat-Talamazz...
GCB
2004
Springer
88views Biometrics» more  GCB 2004»
9 years 5 months ago
Comparison of Centralities for Biological Networks
: The analysis of biological networks involves the evaluation of the vertices within the connection structure of the network. To support this analysis we discuss five centrality m...
Dirk Koschützki, Falk Schreiber
GCB
2004
Springer
85views Biometrics» more  GCB 2004»
9 years 5 months ago
glycosciences.de:  An Internet Portal for Glyco-related Data from Open Access Resources
Thomas Götz, Andreas Bohne-Lang, Martin Frank...
GCB
2004
Springer
101views Biometrics» more  GCB 2004»
9 years 5 months ago
Kleene's Theorem and the Solution of Metabolic Carbon Labeling Systems
: Carbon Labeling Systems (CLS) are large equation systems that describe the dynamics of labeled carbon atoms in a metabolic network. The rapid solution of these systems is the alg...
Nicole Isermann, Michael Weitzel, Wolfgang Wiecher...
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