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SAC
2002
ACM
9 years 11 months ago
Short inversions and conserved gene clusters
Two independent sets of recent observations on newly sequenced microbial genomes pertain to the prevalence of short inversion as a gene order rearrangement process and to the lack...
David Sankoff
TKDE
2008
127views more  TKDE 2008»
9 years 11 months ago
Maximal Subspace Coregulated Gene Clustering
Clustering is a popular technique for analyzing microarray data sets, with n genes and m experimental conditions. As explored by biologists, there is a real need to identify coregu...
Yuhai Zhao, Jeffrey Xu Yu, Guoren Wang, Lei Chen 0...
BMCBI
2007
173views more  BMCBI 2007»
9 years 11 months ago
Recursive Cluster Elimination (RCE) for classification and feature selection from gene expression data
Background: Classification studies using gene expression datasets are usually based on small numbers of samples and tens of thousands of genes. The selection of those genes that a...
Malik Yousef, Segun Jung, Louise C. Showe, Michael...
BMCBI
2006
203views more  BMCBI 2006»
9 years 11 months ago
Independent component analysis reveals new and biologically significant structures in micro array data
Background: An alternative to standard approaches to uncover biologically meaningful structures in micro array data is to treat the data as a blind source separation (BSS) problem...
Attila Frigyesi, Srinivas Veerla, David Lindgren, ...
BIBE
2007
IEEE
195views Bioinformatics» more  BIBE 2007»
10 years 5 months ago
Finding Clusters of Positive and Negative Coregulated Genes in Gene Expression Data
— In this paper, we propose a system for finding partial positive and negative coregulated gene clusters in microarray data. Genes are clustered together if they show the same p...
Kerstin Koch, Stefan Schönauer, Ivy Jansen, J...
RECOMB
2009
Springer
10 years 6 months ago
Inferring the Recent Duplication History of a Gene Cluster
Abstract. Much important evolutionary activity occurs in gene clusters, where a copy of a gene may be free to evolve new functions. Computational methods to extract evolutionary in...
Giltae Song, Louxin Zhang, Tomás Vinar, Web...
RECOMB
2008
Springer
10 years 11 months ago
Computation of Median Gene Clusters
Whole genome comparison based on gene order has become a popular approach in comparative genomics. An important task in this field is the detection of gene clusters, i.e. sets of g...
Sebastian Böcker, Katharina Jahn, Julia Mixta...
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