NAR
2011
12 years 7 months ago
2011
Tomato Functional Genomics Database (TFGD) provides a comprehensive resource to store, query, mine, analyze, visualize and integrate large-scale tomato functional genomics data se...
NAR
2011
12 years 7 months ago
2011
A decade ago, the Gene Expression Omnibus (GEO) database was established at the National Center for Biotechnology Information (NCBI). The original objective of GEO was to serve as...
BMCBI
2011
12 years 8 months ago
2011
Background: Genome-wide transcriptional profiling of patient blood samples offers a powerful tool to investigate underlying disease mechanisms and personalized treatment decisions...
BMCBI
2011
12 years 8 months ago
2011
Background: A central question in cancer biology is what changes cause a healthy cell to form a tumor. Gene expression data could provide insight into this question, but it is dif...
BMCBI
2011
12 years 8 months ago
2011
Background: Statistical methods for ranking differentially expressed genes (DEGs) from gene expression data should be evaluated with regard to high sensitivity, specificity, and r...
BMCBI
2011
12 years 8 months ago
2011
Background: Protein-protein interactions play a fundamental role in elucidating the molecular mechanisms of biomolecular function, signal transductions and metabolic pathways of l...
ICASSP
2011
IEEE
12 years 8 months ago
2011
IEEE
Disease occurs due to aberrant modulation of biological pathways. Identification of activated gene pathways from gene expression data is an important problem. In this work, we de...
MMAS
2010
Springer
12 years 11 months ago
2010
Springer
A unified variational methodology is developed for classification and clustering problems, and tested in the classification of tumors from gene expression data. It is based on flu...
JMLR
2010
12 years 11 months ago
2010
Feature selection for supervised learning can be greatly improved by making use of the fact that features often come in classes. For example, in gene expression data, the genes wh...
BMCBI
2011
12 years 11 months ago
2011
Background: Cross-platform analysis of gene express data requires multiple, intricate processes at different layers with various platforms. However, existing tools handle only a s...