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ISBI
2011
IEEE
9 years 6 months ago
Automated lineage tree reconstruction from Caenorhabditis elegans image data using particle filtering based cell tracking
Caenorhabditis elegans is an important model organism for the study of molecular mechanisms of development and disease processes, due to its well-known genome and invariant cell l...
Noemí Carranza-Herrezuelo, Ihor Smal, Oleh ...
TCBB
2010
136views more  TCBB 2010»
10 years 1 months ago
Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data
— The recent development of methods for extracting precise measurements of spatial gene expression patterns from three-dimensional (3D) image data opens the way for new analyses ...
Oliver Rübel, Gunther H. Weber, Min-Yu Huang,...
IJPP
2008
158views more  IJPP 2008»
10 years 2 months ago
The ParTriCluster Algorithm for Gene Expression Analysis
Analyzing gene expression patterns is becoming a highly relevant task in the Bioinformatics area. This analysis makes it possible to determine the behavior patterns of genes under...
Renata Braga Araújo, Guilherme Henrique Tri...
BMCBI
2002
195views more  BMCBI 2002»
10 years 2 months ago
Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study
Background: A method to evaluate and analyze the massive data generated by series of microarray experiments is of utmost importance to reveal the hidden patterns of gene expressio...
Junbai Wang, Jan Delabie, Hans Christian Aasheim, ...
BMCBI
2004
162views more  BMCBI 2004»
10 years 2 months ago
Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: binary feature versus invariant m
Background: Modern developmental biology relies heavily on the analysis of embryonic gene expression patterns. Investigators manually inspect hundreds or thousands of expression p...
Rajalakshmi Gurunathan, Bernard Van Emden, Sethura...
JIB
2007
88views more  JIB 2007»
10 years 2 months ago
Achieving k-anonymity in DataMarts used for gene expressions exploitation
Gene expression profiling is a sophisticated method to discover differences in activation patterns of genes between different patient collectives. By reasonably defining patient...
Konrad Stark, Johann Eder, Kurt Zatloukal
NAR
2006
110views more  NAR 2006»
10 years 2 months ago
EMAGE: a spatial database of gene expression patterns during mouse embryo development
EMAGE (http://genex.hgu.mrc.ac.uk/Emage/database) is a freely available, curated database of gene expression patterns generated by in situ techniques in the developing mouse embry...
Jeffrey H. Christiansen, Yiya Yang, Shanmugasundar...
NAR
2008
165views more  NAR 2008»
10 years 2 months ago
4DXpress: a database for cross-species expression pattern comparisons
In the major animal model species like mouse, fish or fly, detailed spatial information on gene expression over time can be acquired through whole mount in situ hybridization expe...
Yannick Haudry, Hugo Berube, Ivica Letunic, Paul-D...
BMCBI
2006
120views more  BMCBI 2006»
10 years 3 months ago
The Virtual Insect Brain protocol: creating and comparing standardized neuroanatomy
Background: In the fly Drosophila melanogaster, new genetic, physiological, molecular and behavioral techniques for the functional analysis of the brain are rapidly accumulating. ...
Arnim Jenett, Johannes E. Schindelin, Martin Heise...
BMCBI
2007
176views more  BMCBI 2007»
10 years 3 months ago
Correlation-maximizing surrogate gene space for visual mining of gene expression patterns in developing barley endosperm tissue
Background: Micro- and macroarray technologies help acquire thousands of gene expression patterns covering important biological processes during plant ontogeny. Particularly, fait...
Marc Strickert, Nese Sreenivasulu, Björn Usad...
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