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ALMOB
2007
111views more  ALMOB 2007»
8 years 8 months ago
Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12
Motivation: Transcriptional regulatory network (TRN) discovery from one method (e.g. microarray analysis, gene ontology, phylogenic similarity) does not seem feasible due to lack ...
Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa E...
WOB
2007
116views Bioinformatics» more  WOB 2007»
8 years 9 months ago
Validating Gene Clusterings by Selecting Informative Gene Ontology Terms with Mutual Information
Abstract. We propose a method for global validation of gene clusterings. The method selects a set of informative and non-redundant GO terms through an exploration of the Gene Ontol...
Ivan G. Costa, Marcílio Carlos Pereira de S...
FOIS
2006
8 years 9 months ago
Linking the Gene Ontology with Social Ontology: A Prolegomena to the Ontology of Personhood
The Gene Ontology captures information at a very small scale, namely: molecular function, biological process, and cellular components. At this level, the Gene Ontology project shou...
David R. Koepsell
IJCAI
2007
8 years 9 months ago
Integration of Hybrid Bio-Ontologies using Bayesian Networks for Knowledge Discovery
This paper describes how high level biological knowledge obtained from ontologies such as the Gene Ontology (GO) can be integrated with low level information extracted from a Baye...
Kenneth McGarry, Sheila Garfield, Nick Morris, Ste...
BIS
2008
176views Business» more  BIS 2008»
8 years 9 months ago
Community-Driven Ontology Evolution: Gene Ontology Case Study
Abstract. Communities on the Web capture, represent, and evolve their knowledge using ontologies, either explicitly or implicitly. The Gene Ontology project is a typical and advanc...
Anna V. Zhdanova
CBMS
2008
IEEE
8 years 10 months ago
Generating GO Slim Using Relational Database Management Systems to Support Proteomics Analysis
The Gene Ontology Consortium built the Gene Ontology database (GO) to address the need for a common standard in naming genes and gene products. Using different names for the same ...
Getiria Onsongo, Hongwei Xie, Timothy J. Griffin, ...
APWEB
2006
Springer
8 years 12 months ago
Web-Based Genomic Information Integration with Gene Ontology
Despite the dramatic growth of online genomic data, their understanding is still in early stage. To have meaningful interpretation, it requires the integration of various types of ...
Kai Xu
BIBE
2009
IEEE
185views Bioinformatics» more  BIBE 2009»
9 years 1 months ago
Anomaly-free Prediction of Gene Ontology Annotations Using Bayesian Networks
Gene and protein structural and functional annotations expressed through controlled terminologies and ontologies are paramount especially for the aim of inferring new biomedical k...
Marco Tagliasacchi, Marco Masseroli
AIME
2007
Springer
9 years 2 months ago
Interpreting Gene Expression Data by Searching for Enriched Gene Sets
This paper presents a novel method integrating gene-gene interaction information and Gene Ontology for the construction of new gene sets that are potentially enriched. Enrichment o...
Igor Trajkovski, Nada Lavrac
CBMS
2007
IEEE
9 years 2 months ago
Auto-Extraction, Representation and Integration of a Diabetes Ontology Using Bayesian Networks
This paper describes how high level biological knowledge obtained from ontologies such as the Gene Ontology (GO) can be integrated with low level information extracted from a Baye...
Kenneth McGarry, Sheila Garfield, Stefan Wermter
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