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ISMB
1996
8 years 11 months ago
Gene Prediction by Pattern Recognition and Homology Search
This paper presents an algorithm for combining pattern recognition-based exon prediction and database homologysearch in gene model construction. Thegoal is to use homologousgeneso...
Ying Xu, Edward C. Uberbacher
TREC
2003
8 years 11 months ago
Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification
k gene annotations. Our indexing machinery produces per indexed MEDLINE abstract a list of concepts with an accompanying weight, termed a fingerprint. Searching is done by matching...
Rob Jelier, Martijn J. Schuemie, C. Christiaan van...
PSB
2003
8 years 11 months ago
Towards Identifying Lateral Gene Transfer Events
This paper is concerned with evaluating the performance of the model and algorithm in [7] for detecting lateral gene transfers events. Using a Poisson process to describe arrival t...
Louigi Addario-Berry, Michael T. Hallett, Jens Lag...
PSB
2004
8 years 11 months ago
Motif Discovery in Heterogeneous Sequence Data
This paper introduces the first integrated algorithm designed to discover novel motifs in heterogeneous sequence data, which is comprised of coregulated genes from a single genome...
Amol Prakash, Mathieu Blanchette, Saurabh Sinha, M...
ESANN
2008
8 years 11 months ago
A method for robust variable selection with significance assessment
Our goal is proposing an unbiased framework for gene expression analysis based on variable selection combined with a significance assessment step. We start by discussing the need ...
Annalisa Barla, Sofia Mosci, Lorenzo Rosasco, Ales...
BIOCOMP
2008
8 years 11 months ago
Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling
Background: Inferring a gene regulatory network (GRN) from high throughput biological data is often an under-determined problem and is a challenging task due to the following reas...
Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Ro...
EVOW
2008
Springer
8 years 12 months ago
Detection of Quantitative Trait Associated Genes Using Cluster Analysis
Abstract. Many efforts have been involved in association study of quantitative phenotypes and expressed genes. The key issue is how to efficiently identify phenotype-associated gen...
Zhenyu Jia, Sha Tang, Dan Mercola, Shizhong Xu
CBMS
2007
IEEE
9 years 1 days ago
From Local Laboratory Data to Public Domain Database in Search of Indirect Association of Diseases: AJAX Based Gene Data Search
This paper presents an extensible schema for capturing laboratory gene variance data with its meta-data properties in a semi-structured environment. This paper also focuses on the...
Nawaz Khan, Ham Long, Shahedur Rahman, Tony Stockm...
CSB
2005
IEEE
165views Bioinformatics» more  CSB 2005»
9 years 5 days ago
Sequential Diagonal Linear Discriminant Analysis (SeqDLDA) for Microarray Classification and Gene Identification
In microarray classification we are faced with a very large number of features and very few training samples. This is a challenge for classical Linear Discriminant Analysis (LDA),...
Roger Pique-Regi, Antonio Ortega, Shahab Asgharzad...
CSB
2004
IEEE
136views Bioinformatics» more  CSB 2004»
9 years 2 months ago
AZuRE, a Scalable System for Automated Term Disambiguation of Gene and Protein Names
Researchers, hindered by a lack of standard gene and protein-naming conventions, endure long, sometimes fruitless, literature searches. A system is described which is able to auto...
Raf M. Podowski, John G. Cleary, Nicholas T. Gonch...
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