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SP
2008
IEEE
134views Security Privacy» more  SP 2008»
8 years 10 months ago
Discover gene specific local co-regulations from time-course gene expression data
Discovering gene co-regulatory relationships is one of most important research in DNA microarray data analysis. The problem of gene specific co-regulation discovery is to, for a p...
Ji Zhang, Qigang Gao, Hai H. Wang
PRL
2006
101views more  PRL 2006»
8 years 10 months ago
Regulation probability method for gene selection
This paper proposes a novel method for gene selection. In the method, the gene regulation, an important mechanism of gene activities, is first introduced, and then the probabiliti...
Hong-Qiang Wang, De-Shuang Huang
NAR
2006
119views more  NAR 2006»
8 years 10 months ago
ChloroplastDB: the Chloroplast Genome Database
The Chloroplast Genome Database (ChloroplastDB) is an interactive, web-based database for fully sequenced plastid genomes, containing genomic, protein, DNA and RNA sequences, gene...
Liying Cui, Narayanan Veeraraghavan, Alexander Ric...
NAR
2008
175views more  NAR 2008»
8 years 10 months ago
Onto-CC: a web server for identifying Gene Ontology conceptual clusters
The Gene Ontology (GO) vocabulary has been extensively explored to analyze the functions of coexpressed genes. However, despite its extended use in Biology and Medical Sciences, t...
Rocío Romero-Záliz, Coral del Val, J...
JIB
2006
102views more  JIB 2006»
8 years 10 months ago
Analysing Microarray Data using the Multi-functional Immune Ontologiser
Gene expression microarrays are a prominent experimental tool in functional genomics allowing researchers to gain a deeper understanding of biological processes. To date, no such ...
Sabah Khalid, Karl Fraser, Mohsin Khan, Ping Wang,...
IJON
2008
128views more  IJON 2008»
8 years 10 months ago
Independent arrays or independent time courses for gene expression time series data analysis
In this paper we apply three different independent component analysis (ICA) methods, including spatial ICA (sICA), temporal ICA (tICA), and spatiotemporal ICA (stICA), to gene exp...
Sookjeong Kim, Jong Kyoung Kim, Seungjin Choi
ESWA
2006
103views more  ESWA 2006»
8 years 10 months ago
Model gene network by semi-fixed Bayesian network
Gene networks describe functional pathways in a given cell or tissue, representing processes such as metabolism, gene expression regulation, and protein or RNA transport. Thus, le...
Tie-Fei Liu, Wing-Kin Sung, Ankush Mittal
BMCBI
2007
207views more  BMCBI 2007»
8 years 10 months ago
Analyzing in situ gene expression in the mouse brain with image registration, feature extraction and block clustering
Background: Many important high throughput projects use in situ hybridization and may require the analysis of images of spatial cross sections of organisms taken with cellular lev...
Manjunatha Jagalur, Chris Pal, Erik G. Learned-Mil...
BMCBI
2007
180views more  BMCBI 2007»
8 years 10 months ago
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data
Background: The Affymetrix™ technology is nowadays a well-established method for the analysis of gene expression profiles in cancer research studies. However, changes in gene ex...
Davide Rambaldi, Barbara Felice, Viviane Praz, Phi...
IJDMB
2008
117views more  IJDMB 2008»
8 years 10 months ago
Scoring and summarising gene product clusters using the Gene Ontology
: We propose an approach for quantifying the biological relatedness between gene products, based on their properties, and measure their similarities using exclusively statistical N...
Spiridon C. Denaxas, Christos Tjortjis
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