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BMCBI
2011
10 years 5 months ago
Improving pan-genome annotation using whole genome multiple alignment
Background: Rapid annotation and comparisons of genomes from multiple isolates (pan-genomes) is becoming commonplace due to advances in sequencing technology. Genome annotations c...
Samuel V. Angiuoli, Julie C. Dunning Hotopp, Steve...
BMCBI
2011
10 years 5 months ago
The Proteogenomic Mapping Tool
Background: High-throughput mass spectrometry (MS) proteomics data is increasingly being used to complement traditional structural genome annotation methods. To keep pace with the...
William S. Sanders, Nan Wang, Susan M. Bridges, Br...
AISS
2010
120views more  AISS 2010»
10 years 10 months ago
An Integrated Analysis System for Agricultural Biotechnology Information and Web Service
The National Agricultural Biotechnology Information Center (NABIC) constructs an agricultural biology-based infrastructure and develops a biotechnological database. The NABIC has ...
ChangKug Kim, UngHan Yoon, GangSeob Lee, DoWon Yun...
GCB
2010
Springer
122views Biometrics» more  GCB 2010»
10 years 11 months ago
Quantitative Comparison of Genomic-Wide Protein Domain Distributions
Abstract: Investigations into the origins and evolution of regulatory mechanisms require quantitative estimates of the abundance and co-occurrence of functional protein domains amo...
Arli A. Parikesit, Peter F. Stadler, Sonja J. Proh...
BMCBI
2006
94views more  BMCBI 2006»
11 years 1 months ago
Genepi: a blackboard framework for genome annotation
Background: Genome annotation can be viewed as an incremental, cooperative, data-driven, knowledge-based process that involves multiple methods to predict gene locations and struc...
Stéphane Descorps-Declère, Danielle ...
BMCBI
2007
175views more  BMCBI 2007»
11 years 1 months ago
Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation
Background: Apollo, a genome annotation viewer and editor, has become a widely used genome annotation and visualization tool for distributed genome annotation projects. When using...
Kathrin Klee, Rebecca Ernst, Manuel Spannagl, Klau...
BMCBI
2010
102views more  BMCBI 2010»
11 years 1 months ago
Missing genes in the annotation of prokaryotic genomes
Background: Protein-coding gene detection in prokaryotic genomes is considered a much simpler problem than in intron-containing eukaryotic genomes. However there have been reports...
Andrew S. Warren, Jeremy S. Archuleta, Wu-chun Fen...
GI
2004
Springer
11 years 6 months ago
Dynamic information fusion for genome annotation
: The need for demand-driven and scaleable integration of heterogeneous data sources is inherent to the process of genome annotation. In this paper we describe the Gene-EYe archite...
Heiko Müller, Peter Rieger, Katja Tham, Johan...
GCB
2009
Springer
105views Biometrics» more  GCB 2009»
11 years 8 months ago
Maximum Likelihood Estimation of Weight Matrices for Targeted Homology Search
: Genome annotation relies to a large extent on the recognition of homologs to already known genes. The starting point for such protocols is a collection of known sequences from on...
Peter Menzel, Jan Gorodkin, Peter F. Stadler
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