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NAR
2010
107views more  NAR 2010»
8 years 8 months ago
PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences
Alignment-based programs are valuable tools for finding potential homologs in genome sequences. Previously, it has been shown that partition function posterior probabilities attun...
Satish Chikkagoudar, Dennis R. Livesay, Usman Rosh...
NAR
2000
94views more  NAR 2000»
9 years 1 months ago
INE: a rice genome database with an integrated map view
The Rice Genome Research Program (RGP) launched a large-scale rice genome sequencing in 1998 aimed at decoding all genetic information in rice. A new genome database called INE (I...
Katsumi Sakata, Baltazar A. Antonio, Yoshiyuki Muk...
BMCBI
2005
80views more  BMCBI 2005»
9 years 1 months ago
Gene finding in the chicken genome
Background: Despite the continuous production of genome sequence for a number of organisms, reliable, comprehensive, and cost effective gene prediction remains problematic. This i...
Eduardo Eyras, Alexandre Reymond, Robert Castelo, ...
ENGL
2007
180views more  ENGL 2007»
9 years 1 months ago
Biological Data Mining for Genomic Clustering Using Unsupervised Neural Learning
— The paper aims at designing a scheme for automatic identification of a species from its genome sequence. A set of 64 three-tuple keywords is first generated using the four type...
Shreyas Sen, Seetharam Narasimhan, Amit Konar
BMCBI
2010
105views more  BMCBI 2010»
9 years 1 months ago
Predicting phenotypic traits of prokaryotes from protein domain frequencies
Background: Establishing the relationship between an organism's genome sequence and its phenotype is a fundamental challenge that remains largely unsolved. Accurately predict...
Thomas Lingner, Stefanie Mühlhausen, Toni Gab...
BIBE
2001
IEEE
193views Bioinformatics» more  BIBE 2001»
9 years 5 months ago
GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data
Effective analysis of genome sequences and associated functional data requires access to many different kinds of biological information. For example, when analysing gene expressio...
Mike Cornell, Norman W. Paton, Shengli Wu, Carole ...
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