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CIKM
2008
Springer
11 years 11 months ago
A new method for indexing genomes using on-disk suffix trees
We propose a new method to build persistent suffix trees for indexing the genomic data. Our algorithm DiGeST (Disk-Based Genomic Suffix Tree) improves significantly over previous ...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
HICSS
1995
IEEE
82views Biometrics» more  HICSS 1995»
12 years 1 months ago
A graph-theoretic data model for genome mapping databases
Graphs are a natural foundation for genome map databases. Mapping and other genomic data can be clearly represented by graphs, and graphs can be stored in a database. Graphs are d...
Mark Graves, Ellen R. Bergeman, Charles B. Lawrenc...
BIBE
2001
IEEE
12 years 1 months ago
An XML Application For Genomic Data Interoperation
As the eXtensible Markup Language (XML) becomes a popular or standard language for exchanging data over the Internet/Web, there are a growing number of genome Web sites that make ...
Kei-Hoi Cheung, Yang Liu, Anuj Kumar, Michael Snyd...
CIA
2000
Springer
12 years 2 months ago
Applying Agents to Bioinformatics in GeneWeaver
Recent years have seen dramatic and sustained growth in the amount of genomic data being generated, including in late 1999 the first complete sequence of a human chromosome. The c...
Kevin Bryson, Michael Luck, Mike Joy, David T. Jon...
BIBE
2006
IEEE
123views Bioinformatics» more  BIBE 2006»
12 years 3 months ago
Isolation and Visualization of Codon Usage Biases
While genomic sequencing projects have proved an abundant source of information for biological studies ranging from the molecular to the ecological in scale, much of the informati...
Douglas W. Raiford, Dan E. Krane, Travis E. Doom, ...
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