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HIS
2008
11 years 9 months ago
Towards a Highly Scalable Hybrid Metaheuristic for Haplotype Inference Under Parsimony
Haplotype Inference is a challenging problem in bioinformatics that consists in inferring the basic genetic constitution of diploid organisms on the basis of their genotype. This ...
Stefano Benedettini, Luca Di Gaspero, Andrea Roli
CPAIOR
2008
Springer
11 years 10 months ago
Efficient Haplotype Inference with Combined CP and OR Techniques
Abstract. Haplotype inference has relevant biological applications, and represents a challenging computational problem. Among others, pure parsimony provides a viable modeling appr...
Ana Graça, João Marques-Silva, In&ec...
ANTSW
2008
Springer
11 years 10 months ago
Two-Level ACO for Haplotype Inference Under Pure Parsimony
Abstract. Haplotype Inference is a challenging problem in bioinformatics that consists in inferring the basic genetic constitution of diploid organisms on the basis of their genoty...
Stefano Benedettini, Andrea Roli, Luca Di Gaspero
AB
2007
Springer
12 years 9 days ago
Efficient Haplotype Inference with Pseudo-boolean Optimization
Abstract. Haplotype inference from genotype data is a key computational problem in bioinformatics, since retrieving directly haplotype information from DNA samples is not feasible ...
Ana Graça, João Marques-Silva, In&ec...
WABI
2004
Springer
142views Bioinformatics» more  WABI 2004»
12 years 1 months ago
Linear Reduction for Haplotype Inference
Abstract. Haplotype inference problem asks for a set of haplotypes explaining a given set of genotypes. Popular software tools for haplotype inference (e.g., PHASE, HAPLOTYPER) as ...
Jingwu He, Alexander Zelikovsky
ICTAI
2008
IEEE
12 years 2 months ago
Haplotype Inference with Boolean Constraint Solving: An Overview
Boolean satisfiability (SAT) finds a wide range of practical applications, including Artificial Intelligence and, more recently, Bioinformatics. Although encoding some combinat...
Inês Lynce, Ana Graça, João Ma...
LION
2009
Springer
115views Optimization» more  LION 2009»
12 years 2 months ago
Flexible Stochastic Local Search for Haplotype Inference
Abstract. Haplotype Inference is a challenging problem in bioinformatics that consists in inferring the basic genetic constitution of diploid organisms on the basis of their genoty...
Luca Di Gaspero, Andrea Roli
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