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ICPP
2006
IEEE
9 years 4 months ago
False Rate Analysis of Bloom Filter Replicas in Distributed Systems
Recently, Bloom filters have been widely used in distributed systems where they are replicated to process distributed queries. Bloom filter replicas become stale in a dynamic en...
Yifeng Zhu, Hong Jiang
ICPP
2006
IEEE
9 years 4 months ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal
ICPP
2006
IEEE
9 years 4 months ago
Salsa: Scalable Asynchronous Replica Exchange for Parallel Molecular Dynamics Applications
— This paper presents Salsa, a novel, decentralized and asynchronous realization of the “replica exchange” algorithm for simulating the structure, function, folding, and dyna...
Li Zhang, Manish Parashar, Emilio Gallicchio, Rona...
ICPP
2006
IEEE
9 years 4 months ago
Scalable Time-Parallelization of Molecular Dynamics Simulations in Nano Mechanics
— Molecular Dynamics (MD) is an important atomistic simulation technique, with widespread use in computational chemistry, biology, and materials. An important limitation of MD is...
Yanan Yu, Ashok Srinivasan, Namas Chandra
ICPP
2006
IEEE
9 years 4 months ago
Performance Modeling based on Multidimensional Surface Learning for Performance Predictions of Parallel Applications in Non-Dedi
Modeling the performance behavior of parallel applications to predict the execution times of the applications for larger problem sizes and number of processors has been an active ...
Jay Yagnik, H. A. Sanjay, Sathish S. Vadhiyar
ICPP
2006
IEEE
9 years 4 months ago
Managing Risk of Inaccurate Runtime Estimates for Deadline Constrained Job Admission Control in Clusters
The advent of service-oriented Grid computing has resulted in the need for Grid resources such as clusters to enforce user-specific service needs and expectations. Service Level ...
Chee Shin Yeo, Rajkumar Buyya
ICPP
2006
IEEE
9 years 4 months ago
Achieving Bounded Delay on Message Delivery in Publish/Subscribe Systems
Publish/subscribe (pub/sub) systems are very suitable for the dissemination of dynamic information over the Internet. As dynamic information is usually characterized by a short li...
Jinling Wang, Jiannong Cao, Jing Li, Jie Wu
ICPP
2006
IEEE
9 years 4 months ago
A Formal Analysis of Space Filling Curves for Parallel Domain Decomposition
Space filling curves (SFCs) are widely used for parallel domain decomposition in scientific computing applications. The proximity preserving properties of SFCs are expected to k...
Srikanta Tirthapura, Sudip Seal, Srinivas Aluru
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