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IJBRA
2008
101views more  IJBRA 2008»
9 years 1 days ago
Analysing formal models of genetic regulatory networks with delays
: In this paper, we propose a refinement of the modelling of biological regulatory networks based on the discrete approach of Ren
Jamil Ahmad, Olivier Roux, Gilles Bernot, Jean-Pau...
IJBRA
2008
60views more  IJBRA 2008»
9 years 1 days ago
Sorting by transpositions: dealing with length-weighted models
Xingqin Qi, Jichang Wu, Shuguang Li, Guojun Li
IJBRA
2008
116views more  IJBRA 2008»
9 years 1 days ago
High performance bio-image database retrieval using MPI
: Fast and accurate 3D object reconstruction and partial 3D component retrieval from 2D image slices represent a difficult and challenging problem. To group related objects on diff...
Yong Li, Xiujuan Chen, Saeid Belkasim, Yi Pan
IJBRA
2008
97views more  IJBRA 2008»
9 years 1 days ago
Extracting Protein-Protein Interactions from MEDLINE using the Hidden Vector State model
: A major challenge in text mining for biomedicine is automatically extracting protein-protein interactions from the vast amount of biomedical literature. We have constructed an in...
Deyu Zhou, Yulan He, Chee Keong Kwoh
IJBRA
2008
88views more  IJBRA 2008»
9 years 1 days ago
GOSAP: Gene Ontology-Based Semantic Alignment of Biological Pathways
A large number of biological pathways have been assembled in later years, and are being stored in databases. Hence, the need for methods to analyse these pathways has emerged. One ...
Jonas Gamalielsson, Björn Olsson
IJBRA
2008
63views more  IJBRA 2008»
9 years 1 days ago
Protein cavity clustering based on community structure of pocket similarity network
: Functions of a protein are mainly determined by its structure. Surface cavities, also called pockets or clefts, are ordinarily regarded as potentially active sites where the prot...
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zh...
IJBRA
2008
69views more  IJBRA 2008»
9 years 1 days ago
A matrix-based multilevel approach to identify functional protein modules
: Identifying functional modules is believed to reveal most cellular processes. There have been many computational approaches to investigate the underlying biological structures [2...
Suely Oliveira, Sang-Cheol Seok
IJBRA
2008
66views more  IJBRA 2008»
9 years 1 days ago
Integer programming-based approach to allocation of reporter genes for cell array analysis
Abstract Observing behaviors of protein pathways and genetic networks under various environments in living cells is essential for unraveling disease and developing drugs. For that ...
Morihiro Hayashida, Fuyan Sun, Sachiyo Aburatani, ...
IJBRA
2008
98views more  IJBRA 2008»
9 years 1 days ago
Computationally Optimised DNA Assembly of synthetic genes
: Gene synthesis is hampered by two obstacles:
Liza S. Z. Larsen, Christopher D. Wassman, G. Wesl...
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