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11 years 7 months ago
Webjig: An Automated User Data Collection System for Website Usability Evaluation
In order to improve website usability, it is important for developers to understand how users access websites. In this paper, we present Webjig, which is a support system for websi...
Mikio Kiura, Masao Ohira, Ken-ichi Matsumoto
76views more  BMCBI 2004»
11 years 9 months ago
VisANT: an online visualization and analysis tool for biological interaction data
Background: New techniques for determining relationships between biomolecules of all types
Zhenjun Hu, Joseph C. Mellor, Jie Wu, Charles DeLi...
169views more  BMCBI 2005»
11 years 9 months ago
Genetic interaction motif finding by expectation maximization - a novel statistical model for inferring gene modules from synthe
Background: Synthetic lethality experiments identify pairs of genes with complementary function. More direct functional associations (for example greater probability of membership...
Yan Qi 0003, Ping Ye, Joel S. Bader
112views more  BMCBI 2006»
11 years 10 months ago
A correlated motif approach for finding short linear motifs from protein interaction networks
Background: An important class of interaction switches for biological circuits and disease pathways are short binding motifs. However, the biological experiments to find these bin...
Soon-Heng Tan, Hugo Willy, Wing-Kin Sung, See-Kion...
182views more  BMCBI 2006»
11 years 10 months ago
A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila
Background: Biological processes are mediated by networks of interacting genes and proteins. Efforts to map and understand these networks are resulting in the proliferation of int...
Svetlana Pacifico, Guozhen Liu, Stephen Guest, Jod...
117views more  BMCBI 2008»
11 years 10 months ago
A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge
Background: The functional characterization of newly discovered proteins has been a challenge in the post-genomic era. Protein-protein interactions provide insights into the funct...
Young-Rae Cho, Lei Shi, Murali Ramanathan, Aidong ...
121views more  BMCBI 2008»
11 years 10 months ago
iRefIndex: A consolidated protein interaction database with provenance
Background: Interaction data for a given protein may be spread across multiple databases. We set out to create a unifying index that would facilitate searching for these data and ...
Sabry Razick, George Magklaras, Ian M. Donaldson
109views more  BMCBI 2010»
11 years 10 months ago
Functional characterization and topological modularity of molecular interaction networks
Background: Analyzing interaction networks for functional characterization poses significant challenges arising from the noisy, incomplete, and generic nature of both the interact...
Jayesh Pandey, Mehmet Koyutürk, Ananth Grama
11 years 11 months ago
Colouring the Dimensions of Relevance
In this article we introduce a visualisation technique for analysing relevance and interaction data. It allows the researcher to quickly detect emerging patterns in both interactio...
Ulises Cerviño Beresi, Yunhyong Kim, Mark B...
12 years 4 months ago
Live web search experiments for the rest of us
There are signi´Čücant barriers to academic research into user Web search preferences. Academic researchers are unable to manipulate the results shown by a major search engine to ...
Timothy Jones, David Hawking, Ramesh S. Sankaranar...