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IPPS
2008
IEEE
13 years 11 months ago
Translational research design templates, Grid computing, and HPC
Design templates that involve discovery, analysis, and integration of information resources commonly occur in many scientific research projects. In this paper we present examples o...
Joel H. Saltz, Scott Oster, Shannon Hastings, Step...
IPPS
2008
IEEE
13 years 11 months ago
Grid-based research, development, and deployment in New York State
Russ Miller, Jonathan J. Bednasz, Kenneth Chiu, St...
IPPS
2008
IEEE
13 years 11 months ago
On the Effectiveness of Rebuilding RNA Secondary Structures from Sequence Chunks
Despite the computing power of emerging technologies, predicting long RNA secondary structures with thermodynamics-based methods is still infeasible, especially if the structures ...
Michela Taufer, Thamar Solorio, Abel Licon, David ...
IPPS
2008
IEEE
13 years 11 months ago
Analytic performance models for bounded queueing systems
Praveen Krishnamurthy, Roger D. Chamberlain
IPPS
2008
IEEE
13 years 11 months ago
Performance comparison of SGI Altix 4700 and SGI Altix 3700 Bx2
Suitability of the next generation of high-performance computing systems for petascale simulations will depend on a balance between factors such as processor performance, memory p...
Subhash Saini, Dennis C. Jespersen, Dale Talcott, ...
IPPS
2008
IEEE
13 years 11 months ago
A plug-and-play model for evaluating wavefront computations on parallel architectures
This paper develops a plug-and-play reusable LogGP model that can be used to predict the runtime and scaling behavior of different MPI-based pipelined wavefront applications runni...
Gihan R. Mudalige, Mary K. Vernon, Stephen A. Jarv...
IPPS
2008
IEEE
13 years 11 months ago
A study of master-slave approaches to parallelize NSGA-II
Many of the optimization problems from the real world are multiobjective in nature, and the reference algorithm for multiobjective optimization is NSGA-II. Frequently, these probl...
Juan José Durillo, Antonio J. Nebro, Franci...
IPPS
2008
IEEE
13 years 11 months ago
Scaling alltoall collective on multi-core systems
MPI Alltoall is one of the most communication intense collective operation used in many parallel applications. Recently, the supercomputing arena has witnessed phenomenal growth o...
Rahul Kumar, Amith R. Mamidala, Dhabaleswar K. Pan...
IPPS
2008
IEEE
13 years 11 months ago
Towards a decentralized architecture for optimization
We introduce a generic framework for the distributed execution of combinatorial optimization tasks. Instead of relying on custom hardware (like dedicated parallel machines or clus...
Marco Biazzini, Mauro Brunato, Alberto Montresor