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ISBRA
2010
Springer
11 years 3 months ago
Residue Contexts: Non-sequential Protein Structure Alignment Using Structural and Biochemical Features
The study of non-sequential alignments, with different connectivity of the aligned fragments in the proteins being compared can offer a more complete picture of the structural, evo...
Jay W. Kim, Rahul Singh
ISBRA
2010
Springer
11 years 3 months ago
Analysis of Gene Interactions Using Restricted Boolean Networks and Time-Series Data
A popular model for gene regulatory networks is the Boolean network model. In this paper, we propose an algorithm to perform an analysis of gene regulatory interactions using the B...
Carlos H. A. Higa, Vitor H. P. Louzada, Ronaldo Fu...
ISBRA
2010
Springer
11 years 3 months ago
A Consensus Tree Approach for Reconstructing Human Evolutionary History and Detecting Population Substructure
The random accumulation of variations in the human genome over time implicitly encodes a history of how human populations have arisen, dispersed, and intermixed since we emerged as...
Ming-Chi Tsai, Guy E. Blelloch, R. Ravi, Russell S...
ISBRA
2010
Springer
11 years 8 months ago
A Novel Approach for Compressing Phylogenetic Trees
Abstract. Phylogenetic trees are tree structures that depict relationships between organisms. Popular analysis techniques often produce large collections of candidate trees, which ...
Suzanne Matthews, Seung-Jin Sul, Tiffani L. Willia...
ISBRA
2010
Springer
11 years 10 months ago
Fast Protein Structure Alignment
Yosi Shibberu, Allen Holder, Kyla Lutz
ISBRA
2010
Springer
11 years 11 months ago
Uncovering Hidden Phylogenetic Consensus
Abstract. Many of the steps in phylogenetic reconstruction can be confounded by “rogue” taxa, taxa that cannot be placed with assurance anywhere within the tree—whose locatio...
Nicholas D. Pattengale, Krister M. Swenson, Bernar...
ISBRA
2010
Springer
11 years 11 months ago
"Master-Slave" Biological Network Alignment
d abstract), Nicola Ferraro, Luigi Palopoli, Simona Panni and Simona E. Rombo. Uncovering Hidden Phylogenetic Consensus d abstract), Nicholas Pattengale, Krister Swenson and Bernar...
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simo...
ISBRA
2010
Springer
12 years 4 days ago
Human Genome Annotation
Mark B. Gerstein
ISBRA
2010
Springer
12 years 4 days ago
Modeling without Borders: Creating and Annotating VCell Models Using the Web
Biological research is becoming increasingly complex and data-rich, with multiple public databases providing a variety of resources: hundreds of thousands of substances and interac...
Michael L. Blinov, Oliver Ruebenacker, James C. Sc...
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