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ISMB
1994
13 years 5 months ago
Stochastic Motif Extraction Using Hidden Markov Model
In this paper, westudy the application of an ttMM(hidden Markov model) to the problem of representing protein sequencesby a stochastic motif. Astochastic protein motif represents ...
Yukiko Fujiwara, Minoru Asogawa, Akihiko Konagaya
ISMB
1994
13 years 5 months ago
Neural Networks for Determining Protein Specificity and Multiple Alignment of Binding Sites
Weuse a quantitative definition of specificity to developa neural networkfor the identification of commonprotein binding sites in a collection of unaligned DNAfragments. Wedemonst...
John M. Heumann, Alan S. Lapedes, Gary D. Stormo
ISMB
1994
13 years 5 months ago
Induction of Rules for Biological Macromolecular Crystallization
Daniel N. Hennessy, Vanathi Gopalakrishnan, Bruce ...
ISMB
1994
13 years 5 months ago
Prototyping a Genetics Deductive Database
Weare developing a laboratory notebook system knownas the Genetics Deductive Database. Currently our prototype provides storage for biological facts andrules withflexible accessvi...
Catherine Hearne, Zhan Cui, Simon Parsons, Saki Ha...
ISMB
1994
13 years 5 months ago
RNA Modeling Using Gibbs Sampling and Stochastic Context Free Grammars
Leslie Grate, Mark Herbster, Richard Hughey, David...
ISMB
1994
13 years 5 months ago
A Restriction Mapping Engine Using Constraint Logic Programming
Restrictionmappinggenerallyrequires the applicationof information from various digestions by restriction enzymesto find solution sets. Weuse boththe predicate calculusandconstrain...
Trevor I. Dix, Chut N. Yee
ISMB
1994
13 years 5 months ago
Creating a Knowledge Base of Biological Research Papers
Carole D. Hafner, Kenneth Baclawski, Robert P. Fut...
ISMB
1994
13 years 5 months ago
Using Interval Logic for Order Assembly
Temporallogic, in particular, interval logic has been used to represent genomemapsand to assist genome mapconstructions. However,interval logic itself appears to be bruited in its...
Zhan Cui
ISMB
1994
13 years 5 months ago
An Intelligent System for Comparing Protein Structures
Anapproachto protein structure comparisonis presented whichuses techniquesof artificial intelligence (AI) generate a mappingbetweentwoprotein structures. The approachproceedsby fi...
Ethan Benatan