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JCB
2002
116views more  JCB 2002»
10 years 4 months ago
A Novel Approach to Remote Homology Detection: Jumping Alignments
We describe a new algorithm for protein classi cation and the detection of remote homologs. The rationale is to exploit both vertical and horizontal information of a multiple alig...
Rainer Spang, Marc Rehmsmeier, Jens Stoye
JCB
2002
104views more  JCB 2002»
10 years 4 months ago
Learning Gene Functional Classifications from Multiple Data Types
Paul Pavlidis, Jason Weston, Jinsong Cai, William ...
JCB
2002
61views more  JCB 2002»
10 years 4 months ago
Mining Protein Sequences for Motifs
Giri Narasimhan, Changsong Bu, Yuan Gao, Xuning Wa...
JCB
2002
102views more  JCB 2002»
10 years 4 months ago
A Lower Bound on the Reversal and Transposition Diameter
One possible model to study genome evolution is to represent genomes as permutations of genes and compute distances based on the minimum number of certain operations (rearrangemen...
João Meidanis, Maria Emilia Telles Walter, ...
JCB
2002
74views more  JCB 2002»
10 years 4 months ago
Efficient Algorithms for Quantitative Trait Loci Mapping Problems
Kajsa Ljungberg, Sverker Holmgren, Örjan Carl...
JCB
2002
70views more  JCB 2002»
10 years 4 months ago
Strong Feature Sets from Small Samples
For small samples, classi er design algorithms typically suffer from over tting. Given a set of features, a classi er must be designed and its error estimated. For small samples, ...
Seungchan Kim, Edward R. Dougherty, Junior Barrera...
JCB
2002
131views more  JCB 2002»
10 years 4 months ago
Modeling and Simulation of Genetic Regulatory Systems: A Literature Review
In order to understand the functioning of organisms on the molecular level, we need to know which genes are expressed, when and where in the organism, and to which extent. The reg...
Hidde de Jong
JCB
2002
111views more  JCB 2002»
10 years 4 months ago
A General Edit Distance between RNA Structures
Arc-annotated sequences are useful in representing the structural information of RNA sequences. In general, RNA secondary and tertiary structures can be represented as a set of ne...
Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang
JCB
2002
87views more  JCB 2002»
10 years 4 months ago
The Repetitive Sequence Database and Mining Putative Regulatory Elements in Gene Promoter Regions
At least 43% of the human genome is occupied by repetitive elements. Moreover, around 51% of the rice genome is occupied by repetitive elements. The analysis of repetitive element...
Jorng-Tzong Horng, Hsien-Da Huang, Ming-Hui Jin, L...
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