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IPPS
2010
IEEE
9 years 7 months ago
Scalable parallel I/O alternatives for massively parallel partitioned solver systems
Abstract--With the development of high-performance computing, I/O issues have become the bottleneck for many massively parallel applications. This paper investigates scalable paral...
Jing Fu, Ning Liu, Onkar Sahni, Kenneth E. Jansen,...
APPT
2009
Springer
9 years 8 months ago
The Recursive Dual-Net and Its Applications
Abstract. In this paper, we propose a universal network, called recursive dual-net (RDN). It can be used as a candidate of effective interconnection networks for massively parallel...
Yamin Li, Shietung Peng, Wanming Chu
BMCBI
2010
153views more  BMCBI 2010»
9 years 10 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
PC
2000
95views Management» more  PC 2000»
9 years 10 months ago
Massively parallel computing using commodity components
The Computational Plant (Cplant) project at Sandia National Laboratories is developing a large-scale, massively parallel computing resource from a cluster of commodity computing a...
Ron Brightwell, Lee Ann Fisk, David S. Greenberg, ...
ISMB
1994
9 years 11 months ago
High Speed Pattern Matching in Genetic Data Base with Reconfigurable Hardware
Homologydetection in large data bases is probably the most time consuming operation in molecular genetic computing systems. Moreover, the progresses made all around the world conc...
Eric Lemoine, Joël Quinqueton, Jean Sallantin
CDES
2006
87views Hardware» more  CDES 2006»
9 years 11 months ago
A Configuration Concept for a Massively Parallel FPGA Architecture
Sandeep Kumar, Christof Paar, Jan Pelzl, Gerd Pfei...
DAC
2007
ACM
10 years 2 months ago
Programming Living Cells to Function as Massively Parallel Computers
We have reprogrammed the genomes of living cells to construct massively parallel biological computers capable of processing two-dimensional images at a theoretical resolution of g...
Jeffrey J. Tabor
CF
2007
ACM
10 years 2 months ago
Parallel genomic sequence-search on a massively parallel system
In the life sciences, genomic databases for sequence search have been growing exponentially in size. As a result, faster sequencesearch algorithms to search these databases contin...
Oystein Thorsen, Brian E. Smith, Carlos P. Sosa, K...
IPPS
1997
IEEE
10 years 2 months ago
A Tool for On-line Visualization and Interactive Steering of Parallel HPC Applications
Tools for parallel systems today range from specification over debugging to performance analysis and more. Typically, they help the programmers of parallel algorithms from the ea...
Sabine Rathmayer
HICSS
1997
IEEE
120views Biometrics» more  HICSS 1997»
10 years 2 months ago
Building the 4 Processor SB-PRAM Prototype
The SB-PRAM is a massively parallel, uniform memory access (UMA) shared memory computer. The main ideas of the design are multithreading on instruction level, hashing of the addre...
Peter Bach, Michael Braun, Arno Formella, Jör...
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