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BMCBI
2011
8 years 4 months ago
Outer membrane proteins can be simply identified using secondary structure element alignment
Background: Outer membrane proteins (OMPs) are frequently found in the outer membranes of gram-negative bacteria, mitochondria and chloroplasts and have been found to play diverse...
Ren-Xiang Yan, Zhen Chen, Ziding Zhang
BMCBI
2005
114views more  BMCBI 2005»
8 years 9 months ago
A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins
Background: Structure prediction of membrane proteins is still a challenging computational problem. Hidden Markov models (HMM) have been successfully applied to the problem of pre...
Piero Fariselli, Pier Luigi Martelli, Rita Casadio
BMCBI
2006
105views more  BMCBI 2006»
8 years 9 months ago
Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical featur
Background: Knowing the submitochondria localization of a mitochondria protein is an important step to understand its function. We develop a method which is based on an extended v...
Pufeng Du, Yanda Li
BMCBI
2010
125views more  BMCBI 2010»
8 years 9 months ago
Active machine learning for transmembrane helix prediction
Background: About 30% of genes code for membrane proteins, which are involved in a wide variety of crucial biological functions. Despite their importance, experimentally determine...
Hatice U. Osmanbeyoglu, Jessica A. Wehner, Jaime G...
CIBCB
2009
IEEE
8 years 10 months ago
Improved prediction of trans-membrane spans in proteins using an artificial neural network
Tools for the identification of trans-membrane spans from the protein sequence are widely used in the experimental community. Computational structural biology seeks to increase the...
Julia Koehler, Ralf Mueller, Jens Meiler
ISBI
2007
IEEE
9 years 3 months ago
Perceptual Grouping of Membrane Signals in Cell-Based Assays
Membrane proteins organize themselves in a linear fashion where adjacent cells are attached together along the basal-lateral region. Their intensity distributions are often hetero...
Hang Chang, Kumari L. Andarawewa, Ju Han, Mary Hel...
FBIT
2007
IEEE
9 years 3 months ago
Classification of Cell Membrane Proteins
Membrane proteins are an important class of proteins that serve as channels, receptors, and energy transducers in a cell membrane. Knowledge of a given type of cell membrane prote...
Seyed Koosha Golmohammadi, Lukasz A. Kurgan, Brend...
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