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NC
2010
146views Neural Networks» more  NC 2010»
13 years 2 months ago
Petri nets for modelling metabolic pathways: a survey
Abstract. In the last fifteen years, several research efforts have been directed towards the representation and the analysis of metabolic pathways by using Petri nets. The goal o...
Paolo Baldan, Nicoletta Cocco, Andrea Marin, Marta...
BMCBI
2006
127views more  BMCBI 2006»
13 years 4 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...
BIB
2010
129views more  BIB 2010»
13 years 4 months ago
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
PathwayTools is a production-quality software environment for creating a type of model-organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc integrates ...
Peter D. Karp, Suzanne M. Paley, Markus Krummenack...
ILP
2004
Springer
13 years 9 months ago
Modelling Inhibition in Metabolic Pathways Through Abduction and Induction
Abstract. In this paper, we study how a logical form of scientific modelling that integrates together abduction and induction can be used to understand the functional class of unk...
Alireza Tamaddoni-Nezhad, Antonis C. Kakas, Stephe...