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PC
2012
223views Management» more  PC 2012»
11 years 12 months ago
Using shared arrays in message-driven parallel programs
This paper describes a safe and efficient combination of the object-based message-driven execution and shared array parallel programming models. In particular, we demonstrate how ...
Phil Miller, Aaron Becker, Laxmikant V. Kalé...
CPHYSICS
2008
87views more  CPHYSICS 2008»
13 years 3 months ago
Molecular dynamics studies of swimming at the microscopic scale
The motion of two- and three-dimensional self-propelled microscopic bodies immersed in a fluid medium is studied using molecular dynamics simulation. The advantage of the atomisti...
D. C. Rapaport
VR
2002
IEEE
174views Virtual Reality» more  VR 2002»
13 years 3 months ago
Immersive and Interactive Exploration of Billion-Atom Systems
We have developed a visualization system, named Atomsviewer, to render a billion atoms from the results of a molecular dynamics simulation. This system uses a hierarchical view fr...
Ashish Sharma, Xinlian Liu, Paul Miller, Aiichiro ...
DAGSTUHL
2010
13 years 5 months ago
Saliency Guided Summarization of Molecular Dynamics Simulations
We present a novel method to measure saliency in molecular dynamics simulation data. This saliency measure is based on a multiscale center-surround mechanism, which is fast and ef...
Robert Patro, Cheuk Yiu Ip, Amitabh Varshney
FPL
2007
Springer
150views Hardware» more  FPL 2007»
13 years 8 months ago
Discrete Event Simulation of Molecular Dynamics with Configurable Logic
: Molecular dynamics simulation based on discrete event simulation (DMD) is emerging as an alternative to time-step driven molecular dynamics (MD). DMD uses simplified discretized ...
Josh Model, Martin C. Herbordt
FCCM
2006
IEEE
133views VLSI» more  FCCM 2006»
13 years 10 months ago
A Scalable FPGA-based Multiprocessor
It has been shown that a small number of FPGAs can significantly accelerate certain computing tasks by up to two or three orders of magnitude. However, particularly intensive lar...
Arun Patel, Christopher A. Madill, Manuel Salda&nt...