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NAR
2008
101views more  NAR 2008»
10 years 11 months ago
RNALogo: a new approach to display structural RNA alignment
Regulatory RNAs play essential roles in many essential biological processes, ranging from gene regulation to protein synthesis. This work presents a web-based tool, RNALogo, to cr...
Tzu-Hao Chang, Jorng-Tzong Horng, Hsien-Da Huang
NAR
2008
174views more  NAR 2008»
10 years 11 months ago
miRGator: an integrated system for functional annotation of microRNAs
MicroRNAs (miRNAs) constitute an important class of regulators that are involved in various cellular and disease processes. However, the functional significance of each miRNA is m...
Seungyoon Nam, Bumjin Kim, Seokmin Shin, Sanghyuk ...
NAR
2008
122views more  NAR 2008»
11 years 24 days ago
PlantTFDB: a comprehensive plant transcription factor database
Transcription factors (TFs) play key roles in controlling gene expression. Systematic identification and annotation of TFs, followed by construction of TF databases may serve as u...
Anyuan Guo, Xin Chen, Ge Gao, He Zhang, Qihui Zhu,...
NAR
2006
86views more  NAR 2006»
11 years 1 months ago
MODBASE: a database of annotated comparative protein structure models and associated resources
MODBASE (http://salilab.org/modbase) is a relational database of annotated comparative protein structure models for all available protein sequences matched to at least one known p...
Ursula Pieper, Narayanan Eswar, Fred P. Davis, Han...
NAR
2006
100views more  NAR 2006»
11 years 1 months ago
StellaBase: The Nematostella vectensis Genomics Database
ted Talks and Poster Abstracts S1, T1 Title: Evolution of the Mammalian Lamin A Gene Author: Susan N. LoCurto and Dorothy E. Pumo Affiliation: Hofstra University, Department of Bio...
James C. Sullivan, Joseph F. Ryan, James A. Watson...
NAR
2006
98views more  NAR 2006»
11 years 1 months ago
oGNM: online computation of structural dynamics using the Gaussian Network Model
An assessment of the equilibrium dynamics of biomolecular systems, and in particular their most cooperativefluctuationsaccessibleundernativestate conditions, is a first step towar...
Lee-Wei Yang, A. J. Rader, Xiong Liu, Christopher ...
NAR
2006
81views more  NAR 2006»
11 years 1 months ago
Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser
The Yeast Gene Order Browser (YGOB) is an online tool designed to facilitate the comparative genomic visualization and appraisal of synteny within and between the genomes of seven...
Kevin P. Byrne, Kenneth H. Wolfe
NAR
2006
100views more  NAR 2006»
11 years 1 months ago
The LIFEdb database in 2006
LIFEdb (http://www.LIFEdb.de) integrates data from large-scale functional genomics assays and manual cDNA annotation with bioinformatics gene expression and protein analysis. New ...
Alexander Mehrle, Heiko Rosenfelder, Ingo Schupp, ...
NAR
2006
98views more  NAR 2006»
11 years 1 months ago
dbPTM: an information repository of protein post-translational modification
ACT dbPTM is a database that compiles information on protein post-translational modifications (PTMs), such as the catalytic sites, solvent accessibility of amino acid residues, pro...
Tzong-Yi Lee, Hsien-Da Huang, Jui-Hung Hung, Hsi-Y...
NAR
2006
70views more  NAR 2006»
11 years 1 months ago
GEPS: the Gene Expression Pattern Scanner
Yu-Peng Wang, Liang Liang, Bu-Cong Han, Yu Quan, X...
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