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NAR
2006
74views more  NAR 2006»
13 years 4 months ago
HHrep: de novo protein repeat detection and the origin of TIM barrels
HHrep is a web server for the de novo identification of repeats in protein sequences, which is based on the pairwise comparison of profile hidden Markov models (HMMs). Its main st...
Johannes Söding, Michael Remmert, Andreas Bie...
NAR
2006
170views more  NAR 2006»
13 years 4 months ago
The UCSC Genome Browser Database: update 2006
The University of California Santa Cruz Genome Browser Database (GBD) contains sequence and annotation data for the genomes of about a dozen vertebrate species and several major m...
Angela S. Hinrichs, Donna Karolchik, Robert Baerts...
NAR
2006
61views more  NAR 2006»
13 years 4 months ago
NPInter: the noncoding RNAs and protein related biomacromolecules interaction database
The noncoding RNAs and protein related biomacromolecules interaction database (NPInter; http:// bioinfo.ibp.ac.cn/NPInter or http://www.bioinfo.org. cn/NPInter) is a database that...
Tao Wu, Jie Wang, Changning Liu, Yong Zhang, Baoch...
NAR
2006
188views more  NAR 2006»
13 years 4 months ago
BiologicalNetworks: visualization and analysis tool for systems biology
Systemslevelinvestigationofgenomicscaleinformation requires the development of truly integrated databases dealing with heterogeneous data, which can be queried for simple properti...
Michael Baitaluk, Mayya Sedova, Animesh Ray, Amarn...
NAR
2006
88views more  NAR 2006»
13 years 4 months ago
PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes
We have developed a web tool, PupaSuite, for the selection of single nucleotide polymorphisms (SNPs) with potential phenotypic effect, specifically oriented to help in the design ...
Lucía Conde, Juan M. Vaquerizas, Hern&aacut...
NAR
2006
75views more  NAR 2006»
13 years 4 months ago
DrugBank: a comprehensive resource for in silico drug discovery and exploration
DrugBank is a unique bioinformatics/cheminformatics resource that combines detailed drug (i.e. chemical)data withcomprehensive drug target (i.e.protein) information. The database ...
David S. Wishart, Craig Knox, Anchi Guo, Savita Sh...
NAR
2006
101views more  NAR 2006»
13 years 4 months ago
Epitome: database of structure-inferred antigenic epitopes
Immunoglobulin molecules specifically recognize particular areas on the surface of proteins. These areas are commonly dubbed B-cell epitopes. The identification of epitopes in pro...
Avner Schlessinger, Yanay Ofran, Guy Yachdav, Burk...
NAR
2006
134views more  NAR 2006»
13 years 4 months ago
The MPI Bioinformatics Toolkit for protein sequence analysis
The MPI Bioinformatics Toolkit is an interactive web service which offers access to a great variety of public and in-house bioinformatics tools. They are grouped into different se...
Andreas Biegert, Christian Mayer, Michael Remmert,...
NAR
2006
57views more  NAR 2006»
13 years 4 months ago
SCOPPI: a structural classification of protein-protein interfaces
SCOPPI, the structural classification of protein
Christof Winter, Andreas Henschel, Wan Kyu Kim, Mi...
NAR
2006
74views more  NAR 2006»
13 years 4 months ago
FlyRNAi: the Drosophila RNAi screening center database
RNA interference (RNAi) has become a powerful tool for genetic screening in Drosophila. At the Drosophila RNAi Screening Center (DRSC), we are using a library of over 21 000 doubl...
Ian Flockhart, Matthew Booker, Amy Kiger, Michael ...