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NAR
2006
89views more  NAR 2006»
13 years 4 months ago
AlgPred: prediction of allergenic proteins and mapping of IgE epitopes
In this study a systematic attempt has been made to integrate various approaches in order to predict allergenic proteins with high accuracy. The dataset used for testing and train...
Sudipto Saha, G. P. S. Raghava
NAR
2006
177views more  NAR 2006»
13 years 4 months ago
PUMA2 - grid-based high-throughput analysis of genomes and metabolic pathways
The PUMA2 system (available at http://compbio.mcs. 10 anl.gov/puma2) is an interactive, integrated bioinformatics environment for high-throughput genetic sequence analysis and met...
Natalia Maltsev, Elizabeth M. Glass, Dinanath Sula...
NAR
2006
82views more  NAR 2006»
13 years 4 months ago
The RCSB PDB information portal for structural genomics
10 The RCSB Protein Data Bank (PDB) offers online tools, summary reports and target information related to the worldwide structural genomics initiatives from its portal at http://...
Andrei Kouranov, Lei Xie, Joanna de la Cruz, Li Ch...
NAR
2006
125views more  NAR 2006»
13 years 4 months ago
Phytophthora functional genomics database (PFGD): functional genomics of phytophthora-plant interactions
10 The Phytophthora Functional Genomics Database (PFGD; http://www.pfgd.org), developed by the National Center for Genome Resources in collaboration with The Ohio State University...
Kamal Gajendran, Michael D. Gonzales, Andrew D. Fa...
NAR
2006
89views more  NAR 2006»
13 years 4 months ago
New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate
The Onto-Tools suite is composed of an annotation database and eight complementary, web-accessible data mining tools: Onto-Express, Onto-Compare, Onto-Design, Onto-Translate, Onto...
Purvesh Khatri, Valmik Desai, Adi L. Tarca, Sivaku...
NAR
2006
156views more  NAR 2006»
13 years 4 months ago
VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees
Variable order Markov models and variable order Bayesian trees have been proposed for the recognition of transcription factor binding sites, and it could be demonstrated that they...
Jan Grau, Irad E. Ben-Gal, Stefan Posch, Ivo Gross...
NAR
2006
142views more  NAR 2006»
13 years 4 months ago
miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes
Recent work has demonstrated that microRNAs (miRNAs) are involved in critical biological processes by suppressing the translation of coding genes. This work develops an integrated...
Paul Wei-Che Hsu, Hsien-Da Huang, Sheng-Da Hsu, Li...
NAR
2006
164views more  NAR 2006»
13 years 4 months ago
FISH - family identification of sequence homologues using structure anchored hidden Markov models
The FISH server is highly accurate in identifying the family membership of domains in a query protein sequence, even in the case of very low sequence identities to known homologue...
Jeanette Tångrot, Lixiao Wang, Bo Kågs...
NAR
2006
88views more  NAR 2006»
13 years 4 months ago
RMD: a rice mutant database for functional analysis of the rice genome
Rice Mutant Database (RMD, http://rmd.ncpgr.cn) is an archive for collecting, managing and searching information of the T-DNA insertion mutants generated by an enhancer trap syste...
Jianwei Zhang, Caishun Li, Changyin Wu, Lizhong Xi...
NAR
2006
87views more  NAR 2006»
13 years 4 months ago
From genomics to chemical genomics: new developments in KEGG
The increasing amount of genomic and molecular information is the basis for understanding higherorder biological systems, such as the cell and the 15 organism, and their interacti...
Minoru Kanehisa, Susumu Goto, Masahiro Hattori, Ki...