Sciweavers

NAR
2008
82views more  NAR 2008»
13 years 3 months ago
PIE: an online prediction system for protein-protein interactions from text
Protein
Sun Kim, Soo-Yong Shin, In-Hee Lee, Soo-Jin Kim, R...
NAR
2008
204views more  NAR 2008»
13 years 3 months ago
ppdb: a plant promoter database
ppdb (http://www.ppdb.gene.nagoya-u.ac.jp) is a plant promoter database that provides promoter annotation of Arabidopsis and rice. The database contains information on promoter st...
Yoshiharu Y. Yamamoto, Junichi Obokata
NAR
2008
60views more  NAR 2008»
13 years 3 months ago
The RosettaDock server for local protein-protein docking
The RosettaDock server (http://rosettadock.graylab. jhu.edu) identifies low-energy conformations of a protein
Sergey Lyskov, Jeffrey J. Gray
NAR
2008
191views more  NAR 2008»
13 years 3 months ago
The BioGRID Interaction Database: 2008 update
The Biological General Repository for Interaction Datasets (BioGRID) database (http://www. thebiogrid.org) was developed to house and distribute collections of protein and genetic...
Bobby-Joe Breitkreutz, Chris Stark, Teresa Reguly,...
NAR
2008
114views more  NAR 2008»
13 years 3 months ago
NetworKIN: a resource for exploring cellular phosphorylation networks
Protein kinases control cellular responses by phosphorylating specific substrates. Recent proteomewide mapping of protein phosphorylation sites by mass spectrometry has discovered...
Rune Linding, Lars Juhl Jensen, Adrian Pasculescu,...
NAR
2008
75views more  NAR 2008»
13 years 3 months ago
MEROPS: the peptidase database
Neil D. Rawlings, Fraser R. Morton, Chai Yin Kok, ...
NAR
2008
91views more  NAR 2008»
13 years 3 months ago
GenBank
GenBank (R) is a comprehensive sequence database that contains publicly available DNA sequences for more than 119 000 different organisms, obtained primarily through the submissio...
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. ...
NAR
2008
100views more  NAR 2008»
13 years 3 months ago
DAhunter: a web-based server that identifies homologous proteins by comparing domain architecture
We present DAhunter, a web-based server that identifies homologous proteins by comparing domain architectures, the organization of protein domains. A major obstacle in comparison ...
Byungwook Lee, Doheon Lee
NAR
2008
115views more  NAR 2008»
13 years 3 months ago
Data growth and its impact on the SCOP database: new developments
The Structural Classification of Proteins (SCOP) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationsh...
Antonina Andreeva, Dave Howorth, John-Marc Chandon...
NAR
2008
165views more  NAR 2008»
13 years 3 months ago
4DXpress: a database for cross-species expression pattern comparisons
In the major animal model species like mouse, fish or fly, detailed spatial information on gene expression over time can be acquired through whole mount in situ hybridization expe...
Yannick Haudry, Hugo Berube, Ivica Letunic, Paul-D...