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NAR
2010
88views more  NAR 2010»
12 years 11 months ago
SilkDB v2.0: a platform for silkworm (Bombyx mori ) genome biology
Jun Duan, Ruiqiang Li, Daojun Cheng, Wei Fan, Xing...
NAR
2010
116views more  NAR 2010»
12 years 11 months ago
Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA
The Freiburg RNA tools web server integrates three tools for the advanced analysis of RNA in a common webbased user interface. The tools IntaRNA, ExpaRNA, and LocARNA support the ...
Cameron Smith, Steffen Heyne, Andreas S. Richter, ...
NAR
2010
281views more  NAR 2010»
12 years 11 months ago
PDBselect 1992-2009 and PDBfilter-select
PDBselect (http://bioinfo.tg.fh-giessen.de/pdb select/) is a list of representative protein chains with low mutual sequence identity selected from the protein data bank (PDB) to e...
Sven Griep, Uwe Hobohm
NAR
2010
60views more  NAR 2010»
12 years 11 months ago
GRAPE: GRaphical Abstracted Protein Explorer
Gregory Cipriano, Gary Wesenberg, Tom Grim, George...
NAR
2010
143views more  NAR 2010»
12 years 11 months ago
WormBase: a comprehensive resource for nematode research
WormBase (http://www.wormbase.org) is a central data repository for nematode biology. Initially created as a service to the Caenorhabditis elegans research field, WormBase has evo...
Todd W. Harris, Igor Antoshechkin, Tamberlyn Bieri...
NAR
2010
202views more  NAR 2010»
12 years 11 months ago
dbDEPC: a database of Differentially Expressed Proteins in human Cancers
Cancer-related investigations have long been in the limelight of biomedical research. Years of effort from scientists and doctors worldwide have generated large amounts of data at...
Hong Li, Ying He, Guohui Ding, Chuan Wang, Lu Xie,...
NAR
2010
111views more  NAR 2010»
12 years 11 months ago
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
JASPAR (http://jaspar.genereg.net) is the leading open-access database of matrix profiles describing the DNA-binding patterns of transcription factors (TFs) and other proteins int...
Elodie Portales-Casamar, Supat Thongjuea, Andrew T...
NAR
2010
107views more  NAR 2010»
12 years 11 months ago
NAPS: a residue-level nucleic acid-binding prediction server
Nucleic acid-binding proteins are involved in a great number of cellular processes. Understanding the mechanisms underlying these proteins first requires the identification of spe...
Matthew B. Carson, Robert E. Langlois, Hui Lu
NAR
2010
184views more  NAR 2010»
12 years 11 months ago
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes
The RegPrecise database (http://regprecise.lbl.gov) was developed for capturing, visualization and analysis of predicted transcription factor regulons in prokaryotes that were rec...
Pavel S. Novichkov, Olga N. Laikova, Elena S. Novi...
NAR
2010
106views more  NAR 2010»
12 years 11 months ago
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis
The InParanoid project gathers proteomes of completely sequenced eukaryotic species plus Escherichia coli and calculates pairwise ortholog relationships among them. The new releas...
Gabriel Östlund, Thomas Schmitt, Kristoffer F...