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NAR
2010
135views more  NAR 2010»
12 years 11 months ago
ALTER: program-oriented conversion of DNA and protein alignments
ALTER is an open web-based tool to transform between different multiple sequence alignment formats. The originality of ALTER lies in the fact that it focuses on the specifications...
Daniel Glez-Peña, Daniel Gómez-Blanc...
NAR
2010
116views more  NAR 2010»
12 years 11 months ago
The European Bioinformatics Institute's data resources
As the amount of biological data grows, so does the need for biologists to store and access this information in central repositories in a free and unambiguous manner. The European...
Catherine Brooksbank, Graham Cameron, Janet M. Tho...
NAR
2010
117views more  NAR 2010»
12 years 11 months ago
MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore
During cell division/mitosis, a specific subset of proteins is spatially and temporally assembled into protein super complexes in three distinct regions, i.e. centrosome/spindle p...
Jian Ren, Zexian Liu, Xinjiao Gao, Changjiang Jin,...
NAR
2010
165views more  NAR 2010»
12 years 11 months ago
PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update
: Growth and development of plants depends on uptake and assimilation of nutrients. Many assimilation products of macronutrients are not only essential for plant growth but also ha...
Pawel Durek, Robert Schmidt, Joshua L. Heazlewood,...
NAR
2010
106views more  NAR 2010»
12 years 11 months ago
Protein Geometry Database: a flexible engine to explore backbone conformations and their relationships to covalent geometry
The backbone bond lengths, bond angles, and planarity of a protein are influenced by the backbone conformation (u,w), but no tool exists to explore these relationships, leaving th...
Donald S. Berkholz, Peter B. Krenesky, John R. Dav...
NAR
2010
110views more  NAR 2010»
12 years 11 months ago
FlyTED: the Drosophila Testis Gene Expression Database
Jun Zhao, Graham Klyne, Elizabeth Benson, Elin Gud...
NAR
2010
194views more  NAR 2010»
12 years 11 months ago
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data
Alternative splicing is an important mechanism for increasing protein diversity. However, its functional effects are largely unknown. Here, we present our new software workflow co...
Dorothea Emig, Nathan Salomonis, Jan Baumbach, Tho...
NAR
2010
95views more  NAR 2010»
12 years 11 months ago
HexServer: an FFT-based protein docking server powered by graphics processors
Gary Macindoe, Lazaros Mavridis, Vishwesh Venkatra...
NAR
2010
107views more  NAR 2010»
12 years 11 months ago
FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database
FlyTF (http://www.flytf.org) is a database of computationally predicted and/or experimentally verified site-specific transcription factors (TFs) in the fruit fly Drosophila melano...
Ulrike Pfreundt, Daniel P. James, Susan Tweedie, D...
NAR
2010
159views more  NAR 2010»
12 years 11 months ago
GeneSigDB - a curated database of gene expression signatures
The primary objective of most gene expression studies is the identification of one or more gene signatures; lists of genes whose transcriptional levels are uniquely associated wit...
Aedín C. Culhane, Thomas Schwarzl, Razvan S...