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NAR
2010
94views more  NAR 2010»
12 years 11 months ago
Saccharomyces Genome Database provides mutant phenotype data
The Saccharomyces Genome Database (SGD; http:// www.yeastgenome.org) is a scientific database for the molecular biology and genetics of the yeast Saccharomyces cerevisiae, which i...
Stacia R. Engel, Rama Balakrishnan, Gail Binkley, ...
NAR
2010
174views more  NAR 2010»
12 years 11 months ago
BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum
BeetleBase (http://www.beetlebase.org) has been updated to provide more comprehensive genomic information for the red flour beetle Tribolium castaneum. The database contains genom...
Hee Shin Kim, Terence Murphy, Jing Xia, Doina Cara...
NAR
2010
115views more  NAR 2010»
12 years 11 months ago
ChimerDB 2.0 - a knowledgebase for fusion genes updated
Chromosome translocations and gene fusions are frequent events in the human genome and have been found to cause diverse types of tumor. ChimerDB is a knowledgebase of fusion genes...
Pora Kim, Suhyeon Yoon, Namshin Kim, Sanghyun Lee,...
NAR
2010
123views more  NAR 2010»
12 years 11 months ago
Discovering causal signaling pathways through gene-expression patterns
High-throughput gene-expression studies result in lists of differentially expressed genes. Most current meta-analyses of these gene lists include searching for significant members...
Jignesh R. Parikh, Bertram Klinger, Yu Xia, Jarrod...
NAR
2010
173views more  NAR 2010»
12 years 11 months ago
The Protein Naming Utility: a rules database for protein nomenclature
Generation of syntactically correct and unambiguous names for proteins is a challenging, yet vital task for functional annotation processes. Proteins are often named based on homo...
Johannes Goll, Robert Montgomery, Lauren M. Brinka...
NAR
2010
189views more  NAR 2010»
12 years 11 months ago
Serial Expression Analysis: a web tool for the analysis of serial gene expression data
Serial transcriptomics experiments investigate the dynamics of gene expression changes associated with a quantitative variable such as time or dosage. The statistical analysis of ...
María José Nueda, José Carbon...
NAR
2010
192views more  NAR 2010»
12 years 11 months ago
IPD - the Immuno Polymorphism Database
James Robinson, Kavita Mistry, Hamish McWilliam, R...
NAR
2010
107views more  NAR 2010»
12 years 11 months ago
The Immune Epitope Database 2.0
Randi Vita, Laura Zarebski, Jason Greenbaum, Husse...
NAR
2010
107views more  NAR 2010»
12 years 11 months ago
PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences
Alignment-based programs are valuable tools for finding potential homologs in genome sequences. Previously, it has been shown that partition function posterior probabilities attun...
Satish Chikkagoudar, Dennis R. Livesay, Usman Rosh...