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NC
2006
149views Neural Networks» more  NC 2006»
9 years 7 months ago
The Construction of Minimal DNA Expressions
Abstract. We describe a formal language/notation for DNA molecules that may contain nicks and gaps. The elements of the language, DNA expressions, denote formal DNA molecules. Diff...
Rudy van Vliet, Hendrik Jan Hoogeboom, Grzegorz Ro...
NC
2006
116views Neural Networks» more  NC 2006»
9 years 7 months ago
Automated Design and Programming of a Microfluidic DNA Computer
Previously, we described ways to implement the functions AND and OR in a DNA computer consisting of microreactors with attached heating elements that control annealing of DNA. Base...
Michael S. Livstone, Ron Weiss, Laura F. Landweber
NC
2006
132views Neural Networks» more  NC 2006»
9 years 7 months ago
Learning short multivariate time series models through evolutionary and sparse matrix computation
Multivariate Time Series (MTS) data are widely available in different fields including medicine, finance, bioinformatics, science and engineering. Modelling MTS data accurately is...
Stephen Swift, Joost N. Kok, Xiaohui Liu
NC
2006
130views Neural Networks» more  NC 2006»
9 years 7 months ago
Dynamic self-assembly in living systems as computation
Biochemical reactions taking place in living systems that map different inputs to specific outputs are intuitively recognized as performing information processing. Conventional wis...
Ann M. Bouchard, Gordon C. Osbourn
NC
2006
9 years 7 months ago
A DNA Superstructure-based Replicator without Product Inhibition
A monomer structure based on a hairpin loop is described that can be linked via short oligonucleotide sequences (linkers) to form polymers. Independence of linked monomers allow fo...
David Y. Zhang, Bernard Yurke
NC
2008
122views Neural Networks» more  NC 2008»
9 years 7 months ago
Computation with finite stochastic chemical reaction networks
A highly desired part of the synthetic biology toolbox is an embedded chemical microcontroller, capable of autonomously following a logic program specified by a set of instructions...
David Soloveichik, Matthew Cook, Erik Winfree, Jeh...
NC
2008
109views Neural Networks» more  NC 2008»
9 years 7 months ago
Abstraction layers for scalable microfluidic biocomputing
William Thies, John Paul Urbanski, Todd Thorsen, S...
NC
2008
120views Neural Networks» more  NC 2008»
9 years 7 months ago
Combining self-healing and proofreading in self-assembly
Molecular self-assembly is a promising approach to bottom-up fabrication of complex structures. A major impediment to the practical use of self-assembly to create complex structure...
David Soloveichik, Matthew Cook, Erik Winfree
NC
2008
9 years 7 months ago
How crystals that sense and respond to their environments could evolve
An enduring mystery in biology is how a physical entity simple enough to have arisen spontaneously could have evolved into the complex life seen on Earth today. Cairns-Smith has pr...
Rebecca Schulman, Erik Winfree
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