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IJBRA
2008
63views more  IJBRA 2008»
13 years 3 months ago
Protein cavity clustering based on community structure of pocket similarity network
: Functions of a protein are mainly determined by its structure. Surface cavities, also called pockets or clefts, are ordinarily regarded as potentially active sites where the prot...
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zh...
BMCBI
2010
154views more  BMCBI 2010»
13 years 3 months ago
Binary image representation of a ligand binding site: its application to efficient sampling of a conformational ensemble
Background: Modelling the ligand binding site of a protein is an important component of understanding proteinligand interactions and is being actively studied. Even if the side ch...
Edon Sung, Sangsoo Kim, Whanchul Shin
CCCG
2006
13 years 5 months ago
Polygons Flip Finitely: Flaws and a Fix
Every simple planar polygon can undergo only a finite number of pocket flips before becoming convex. Since Erdos posed this as an open problem in 1935, several independent purport...
Erik D. Demaine, Blaise Gassend, Joseph O'Rourke, ...
ESA
2006
Springer
77views Algorithms» more  ESA 2006»
13 years 7 months ago
Traversing the Machining Graph
Abstract. Zigzag pocket machining (or 2D-milling) plays an important role in the manufacturing industry. The objective is to minimize the number of tool retractions in the zigzag m...
Danny Z. Chen, Rudolf Fleischer, Jian Li, Haitao W...