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PRIB
2009
Springer
187views Bioinformatics» more  PRIB 2009»
13 years 9 months ago
Semi-supervised Prediction of Protein Interaction Sentences Exploiting Semantically Encoded Metrics
Protein-protein interaction (PPI) identification is an integral component of many biomedical research and database curation tools. Automation of this task through classification ...
Tamara Polajnar, Mark A. Girolami
PRIB
2009
Springer
13 years 9 months ago
Syntactic Pattern Recognition Using Finite Inductive Strings
A syntactic pattern recognition technique is described based upon a mathematical principle associated with finite sequences of symbols. The technique allows for fast recognition of...
Paul S. Fisher, Howard Fisher, Jinsuk Baek, Cleopa...
PRIB
2009
Springer
147views Bioinformatics» more  PRIB 2009»
13 years 11 months ago
Cross-Platform Analysis with Binarized Gene Expression Data
Abstract. With widespread use of microarray technology as a potential diagnostics tool, the comparison of results obtained from the use of different platforms is of interest. When...
Salih Tuna, Mahesan Niranjan
PRIB
2009
Springer
113views Bioinformatics» more  PRIB 2009»
13 years 11 months ago
c-GAMMA: Comparative Genome Analysis of Molecular Markers
Discovery of molecular markers for efficient identification of living organisms remains a challenge of high interest. The diversity of species can now be observed in details with ...
Pierre Peterlongo, Jacques Nicolas, Dominique Lave...
PRIB
2009
Springer
135views Bioinformatics» more  PRIB 2009»
13 years 11 months ago
Sequential Hierarchical Pattern Clustering
Abstract. Clustering is a widely used unsupervised data analysis technique in machine learning. However, a common requirement amongst many existing clustering methods is that all p...
Bassam Farran, Amirthalingam Ramanan, Mahesan Nira...
PRIB
2009
Springer
209views Bioinformatics» more  PRIB 2009»
13 years 11 months ago
Class Prediction from Disparate Biological Data Sources Using an Iterative Multi-Kernel Algorithm
For many biomedical modelling tasks a number of different types of data may influence predictions made by the model. An established approach to pursuing supervised learning with ...
Yiming Ying, Colin Campbell, Theodoros Damoulas, M...
PRIB
2009
Springer
100views Bioinformatics» more  PRIB 2009»
13 years 11 months ago
Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data
Abstract. The rapidly emerging field of metagenomics seeks to examine the genomic content of communities of organisms to understand their roles and interactions in an ecosystem. I...
Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, E...
PRIB
2009
Springer
120views Bioinformatics» more  PRIB 2009»
13 years 11 months ago
Knowledge-Guided Docking of WW Domain Proteins and Flexible Ligands
Studies of interactions between protein domains and ligands are important in many aspects such as cellular signaling. We present a knowledge-guided approach for docking protein dom...
Haiyun Lu, Hao Li, Shamima Banu Bte Sm Rashid, Wee...