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NAR
2011
214views Computer Vision» more  NAR 2011»
7 years 10 months ago
IEDB-3D: structural data within the immune epitope database
IEDB-3D is the 3D structural component of the Immune Epitope Database (IEDB) available via the ‘Browse by 3D Structure’ page at http://www.iedb .org. IEDB-3D catalogs B- and T...
Julia V. Ponomarenko, Nikitas Papangelopoulos, Dir...
NAR
2011
162views Computer Vision» more  NAR 2011»
7 years 10 months ago
GlycomeDB - a unified database for carbohydrate structures
GlycomeDB integrates the structural and taxonomic data of all major public carbohydrate databases, as well as carbohydrates contained in the Protein Data Bank, which renders the d...
René Ranzinger, Stephan Herget, Claus-Wilhe...
NAR
2011
191views Computer Vision» more  NAR 2011»
7 years 10 months ago
The protein common interface database (ProtCID) - a comprehensive database of interactions of homologous proteins in multiple cr
The protein common interface database (ProtCID) is a database that contains clusters of similar homodimeric and heterodimeric interfaces observed in multiple crystal forms (CFs). ...
Qifang Xu, Roland L. Dunbrack Jr.
NAR
2010
281views more  NAR 2010»
8 years 1 months ago
PDBselect 1992-2009 and PDBfilter-select
PDBselect (http://bioinfo.tg.fh-giessen.de/pdb select/) is a list of representative protein chains with low mutual sequence identity selected from the protein data bank (PDB) to e...
Sven Griep, Uwe Hobohm
NAR
2011
274views Computer Vision» more  NAR 2011»
8 years 2 months ago
A series of PDB related databases for everyday needs
The Protein Data Bank (PDB) is the world-wide repository of macromolecular structure information. We present a series of databases that run parallel to the PDB. Each database hold...
Robbie P. Joosten, Tim A. H. te Beek, Elmar Kriege...
NAR
2007
136views more  NAR 2007»
8 years 6 months ago
DBAli tools: mining the protein structure space
The DBAli tools use a comprehensive set of structural alignments in the DBAli database to leverage the structural information deposited in the Protein Data Bank (PDB). These tools...
Marc A. Martí-Renom, Ursula Pieper, Mallur ...
NAR
2002
63views more  NAR 2002»
8 years 6 months ago
The Protein Data Bank: unifying the archive
The Protein Data Bank (PDB; http://www.pdb.org/) is the single worldwide archive of structural data of biological macromolecules. This paper describes the progress that has been m...
John D. Westbrook, Zukang Feng, Shri Jain, T. N. B...
NAR
2000
102views more  NAR 2000»
8 years 7 months ago
The Protein Data Bank
The Protein Data Bank (PDB; http://www.rcsb.org/pdb/ ) is the single worldwide archive of structural data of biological macromolecules. This paper describes the goals of the PDB, ...
Helen M. Berman, John D. Westbrook, Zukang Feng, G...
BMCBI
2008
85views more  BMCBI 2008»
8 years 7 months ago
Wanted: unique names for unique atom positions. PDB-wide analysis of diastereotopic atom names of small molecules containing dip
Background: Biological chemistry is very stereospecific. Nonetheless, the diastereotopic oxygen atoms of diphosphate-containing molecules in the Protein Data Bank (PDB) are often ...
Christopher A. Bottoms, Dong Xu
BMCBI
2008
104views more  BMCBI 2008»
8 years 7 months ago
Analyzing the simplicial decomposition of spatial protein structures
Background: The fast growing Protein Data Bank contains the three-dimensional description of more than 45000 protein- and nucleic-acid structures today. The large majority of the ...
Rafael Ördög, Zoltan Szabadka, Vince Gro...
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