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ICASSP
2011
IEEE
9 years 5 months ago
Fast network querying algorithm for searching large-scale biological networks
Network querying aims to search a large network for subnetwork regions that are similar to a given query network. In this paper, we propose a novel algorithm for querying large sc...
Sayed Mohammad Ebrahim Sahraeian, Byung-Jun Yoon
SSDBM
2010
IEEE
185views Database» more  SSDBM 2010»
9 years 11 months ago
DESSIN: Mining Dense Subgraph Patterns in a Single Graph
Currently, a large amount of data can be best represented as graphs, e.g., social networks, protein interaction networks, etc. The analysis of these networks is an urgent research ...
Shirong Li, Shijie Zhang, Jiong Yang
BMCBI
2008
95views more  BMCBI 2008»
10 years 1 months ago
Mining protein networks for synthetic genetic interactions
Background: The local connectivity and global position of a protein in a protein interaction network are known to correlate with some of its functional properties, including its e...
Sri R. Paladugu, Shan Zhao, Animesh Ray, Alpan Rav...
ISBRA
2010
Springer
10 years 7 months ago
"Master-Slave" Biological Network Alignment
d abstract), Nicola Ferraro, Luigi Palopoli, Simona Panni and Simona E. Rombo. Uncovering Hidden Phylogenetic Consensus d abstract), Nicholas Pattengale, Krister Swenson and Bernar...
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simo...
LION
2009
Springer
112views Optimization» more  LION 2009»
10 years 7 months ago
A Graph-Based Semi-supervised Algorithm for Protein Function Prediction from Interaction Maps
Abstract. Protein function prediction represents a fundamental challenge in bioinformatics. The increasing availability of proteomics network data has enabled the development of se...
Valerio Freschi
RECOMB
2006
Springer
11 years 1 months ago
Integrated Protein Interaction Networks for 11 Microbes
We have combined four different types of functional genomic data to create high coverage protein interaction networks for 11 microbes. Our integration algorithm naturally handles s...
Balaji S. Srinivasan, Antal F. Novak, Jason Flanni...
KDD
2004
ACM
125views Data Mining» more  KDD 2004»
11 years 1 months ago
Differential Association Rule Mining for the Study of Protein-Protein Interaction Networks
Protein-protein interactions are of great interest to biologists. A variety of high-throughput techniques have been devised, each of which leads to a separate definition of an int...
Christopher Besemann, Anne Denton, Ajay Yekkirala,...
RECOMB
2009
Springer
11 years 1 months ago
Topology-Free Querying of Protein Interaction Networks
Sharon Bruckner, Falk Hüffner, Richard M. Kar...
RECOMB
2009
Springer
11 years 1 months ago
Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information
Abstract. Hierarchical clustering is a popular method for grouping together similar elements based on a distance measure between them. In many cases, annotation information for som...
Saket Navlakha, James Robert White, Niranjan Nagar...
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