ISMB
2000
13 years 5 months ago
2000
A novel description of protein structure in terms of the generalized secondary structure elements (GSSE) is proposed. GSSE's are defined as fragments of the protein structure...
BIOCOMP
2006
13 years 5 months ago
2006
- The search for structural similarity among proteins can provide valuable insights into their functional mechanisms and their functional relationships. Though the protein 1D seque...
BIRD
2008
Springer
13 years 6 months ago
2008
Springer
Abstract. We describe a new method for the exploration of evolutionary relations between protein structures. The approach is based on the ESSM algorithm for detecting structural mu...
GCB
2000
Springer
13 years 8 months ago
2000
Springer
We describe an algorithm for the automatic discovery of recurring patterns in protein structures. The patterns consist of individual residues having a defined order along the prote...
3DPVT
2002
IEEE
13 years 9 months ago
2002
IEEE
In this paper we present a method for protein structure comparison that is based on indexing. Unlike most methods using indexing, ours does not use invariants of the C atoms of th...
GCB
2005
Springer
13 years 9 months ago
2005
Springer
Motivation: With the increasing availability of protein structures, the generation of biologically meaningful 3D patterns from the simultaneous alignment of several protein struct...
BIRD
2007
Springer
13 years 10 months ago
2007
Springer
Comparison of 3-dimensional protein folds is a core problem in molecular biology. The Contact Map Overlap (CMO) scheme provides one of the most common measures for protein structur...
BICOB
2009
Springer
13 years 11 months ago
2009
Springer
Here we present a simple method based on graph spectral properties to automatically partition multi-domain proteins into individual domains. The identification of structural domain...