ICDE
2012
IEEE
11 years 7 months ago
2012
IEEE
—Sequence analysis is very important in our daily life. Typically, each sequence is associated with an ordered list of elements. For example, in a movie rental application, a cus...
DAWAK
2011
Springer
12 years 4 months ago
2011
Springer
(The original conference version of this paper mischaracterizes the contributions of the current authors, relative to the contributions of Keogh et al. [11, 12]. We would like to ...
JCB
1998
13 years 4 months ago
1998
The function of an unknown biological sequence can often be accurately inferred by identifying sequences homologous to the original sequence. Given a query set of known homologs, ...
BMCBI
2004
13 years 4 months ago
2004
Background: Existing sequence alignment algorithms assume that similarities between DNA or amino acid sequences are linearly ordered. That is, stretches of similar nucleotides or ...
BMCBI
2008
13 years 4 months ago
2008
Background: A new algorithm has been developed for generating conservation profiles that reflect the evolutionary history of the subfamily associated with a query sequence. It is ...
ISMB
1996
13 years 5 months ago
1996
Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
GCB
2006
Springer
13 years 8 months ago
2006
Springer
: Despite many years of research on how to properly align sequences in the presence of sequencing errors, alternative splicing and micro-exons, the correct alignment of mRNA sequen...
SIGMOD
2004
ACM
14 years 4 months ago
2004
ACM
Growing interest in genomic research has resulted in the creation of huge biological sequence databases. In this paper, we present a hash-based pier model for efficient homology s...