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RECOMB
2007
Springer
9 years 7 months ago
Parts of the Problem of Polyploids in Rearrangement Phylogeny
Abstract. Genome doubling simultaneously doubles all genetic markers. Genome rearrangement phylogenetics requires that all genomes analyzed have the same set of orthologs, so that ...
Chunfang Zheng, Qian Zhu, David Sankoff
RECOMB
2007
Springer
9 years 7 months ago
Nucleosome Occupancy Information Improves de novo Motif Discovery
A complete understanding of transcriptional regulatory processes in the cell requires identification of transcription factor binding sites on a genomewide scale. Unfortunately, th...
Leelavati Narlikar, Raluca Gordân, Alexander...
RECOMB
2007
Springer
9 years 7 months ago
Network Legos: Building Blocks of Cellular Wiring Diagrams
Publicly-available data sets provide detailed and large-scale information on multiple types of molecular interaction networks in a number of model organisms. These multi-modal univ...
T. M. Murali, Corban G. Rivera
RECOMB
2007
Springer
10 years 1 months ago
Reconstructing an Inversion History in the Anopheles Gambiae Complex
Ai Xia, Maria V. Sharakhova, Igor V. Sharakhov
RECOMB
2007
Springer
10 years 1 months ago
Evolution of Tandemly Arrayed Genes in Multiple Species
Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk
RECOMB
2007
Springer
10 years 1 months ago
Inferring a Duplication, Speciation and Loss History from a Gene Tree (Extended Abstract)
Cedric Chauve, Jean-Philippe Doyon, Nadia El-Mabro...
RECOMB
2007
Springer
10 years 1 months ago
A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications
Accurately reconstructing the large-scale gene order in an ancestral genome is a critical step to better understand genome evolution. In this paper, we propose a heuristic algorith...
Jian Ma, Aakrosh Ratan, Louxin Zhang, Webb Miller,...
RECOMB
2007
Springer
10 years 1 months ago
Selecting Genomes for Reconstruction of Ancestral Genomes
It is often impossible to sequence all descendent genomes to reconstruct an ancestral genome. In addition, more genomes do not necessarily give a higher accuracy for the reconstruc...
Guoliang Li, Jian Ma, Louxin Zhang
RECOMB
2007
Springer
10 years 1 months ago
Learning Gene Regulatory Networks via Globally Regularized Risk Minimization
Learning the structure of a gene regulatory network from time-series gene expression data is a significant challenge. Most approaches proposed in the literature to date attempt to ...
Yuhong Guo, Dale Schuurmans
RECOMB
2007
Springer
10 years 1 months ago
How to Achieve an Equivalent Simple Permutation in Linear Time
The problem of Sorting signed permutations by reversals is a well studied problem in computational biology. The first polynomial time algorithm was presented by Hannenhalli and Pev...
Simon Gog, Martin Bader
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